• Skip to primary navigation
  • Skip to main content
  • Skip to primary sidebar
freebie! download my top 8 dessert recipe ebook

Join my newsletter for latest recipes!

Erin Lives Whole

Healthy Eats + Delicious Treats

  • Recipe Index
    • Course
      • Appetizers
      • Breakfast
      • Lunch & Dinner
      • Dessert
      • Soup
      • Sides
      • Drinks
      • Snacks
      • Sauces & Dips
    • Dessert Type
      • Bars & Balls
      • Breads & Muffins
      • Brownies
      • Cakes
      • Candy
      • Cookies
      • Frozen
      • Pie & Cobbler
      • Other
    • Diet
      • Dairy-Free
      • Gluten-Free
      • Nut-Free
      • Paleo Friendly
      • Vegan
      • Vegetarian
    • Method
      • 30 Minute or Less
      • Air Fryer
      • Grill
      • Instant Pot
      • Meal Prep
      • No Bake
      • One Pot/Pan
      • Oven
      • Stove Top
    • Season
      • Fall
      • Holiday
      • Winter
      • Spring
      • Summer
    • Recipe Filter
    • All Recipes
  • Ebooks
  • Shop
  • Lifestyle
  • About
    • Work With Me
    • Contact
  • Subscribe to receive latest recipes

    Join my newsletter for latest recipes!

  • Browse by Diet
    • Gluten-Free
    • Dairy-Free
    • Nut-Free
    • Paleo Friendly
    • Vegan
    • Vegetarian
  • Breakfast
  • Lunch & Dinner
  • Drinks
  • Snacks
  • Dessert
  • Appetizers
Home Recipes By Meal Breakfast

Healthy Chocolate Zucchini Muffins

87 Reviews Recipe
gf df p
By: Erin Antoniak • Updated On January 29, 2023

This post may contain affiliate links. Please read my disclosure policy.

An easy and healthy recipe for gluten free chocolate zucchini muffins, made with low carb ingredients like almond flour. These double chocolate muffins are moist, fluffy, and perfect for kids and adults alike!

chocolate zucchini muffin

Delicious double chocolate zucchini muffins

These gluten free chocolate zucchini muffins may just be my new favorite breakfast ever. First off, who doesn’t want to eat chocolate for breakfast? Second off, they are loaded with healthy and wholesome ingredients like almond flour, maple syrup, and zucchini.

That’s right, we’re sneaking in some veggies! But, don’t worry. These muffins don’t taste healthy at all. The veggies actually add to the texture by providing a moist, fluffy consistency that makes them that much better.

I love baking with zucchini and have to share my Zucchini Protein Baked Oats too. They are a must bake.

chocolate muffin with peanut butter and chocolate chips and bite taken out of it

These are one of my favorite treats to make ahead of time for breakfast whenever I have a busy morning. If you’re whipping up an entire batch and you don’t need them all right away, just pop them in the freezer for later.

When you’re ready to dive in, defrost them on the counter or in the fridge and you’ve got yourself a homemade bakery style muffin in literally no time.

Bonus Tip: I’m known to slather one up with some peanut butter or almond butter, throw some extra chocolate chips on top, and dive in. 10/10 recommend!

Long story short, these treats are pure bliss.

chocolate muffin cut in half with zucchini shreds and chocolate chips

Ingredients used in chocolate chip zucchini muffins

This ingredients list is simple, easy, and filled with things you most likely already have in your pantry. I love when a recipe includes mostly staples, because it means I probably won’t need to make a trip to the grocery store. The simpler, the better!

Almond flour
I use almond flour in these muffins to make them completely gluten-free and low-carb. This ingredient doubles as my favorite healthy swap because it’s more nutrient-rich than other flours and helps to create moist and fluffy baked goods!

Cocoa powder
I like to use a dark or Dutch processed cocoa powder. In fact, my favorite type is the Whole Foods 365 brand because it provides the perfect amount of chocolate flavor! I often use this ingredient in my chocolate baked goods.

Coconut oil
Coconut oil is my go-to oil because it’s a great alternative to canola or vegetable oil. If you don’t like the flavor of coconut, use a refined option. The refined versions don’t come with a nutty taste, which is why I use that type in most of my recipes.

Maple syrup
By far my favorite non-refined, all-natural sweetener! I love to use this ingredient because it provides the perfect amount of sweet flavor.

Eggs
For this recipe, eggs help to create the correct consistency and contribute to the fluffy texture.

Zucchini
Feel free to keep the skin on your zucchini when shredding it. You can go for a fine shred by using a food processor, or skip that step if you prefer bigger zucchini chunks. I also like to lightly squeeze mine after shredding to discard the extra moisture.

Chocolate chips
The chocolate chips make this recipe complete! I use the dairy free type from Enjoy Life, but you can use whichever brand you prefer.

Tools needed to make this recipe

As far as kitchen items are concerned, you’ll need the following:

  • Muffin tin
  • Muffin liners
  • Non-stick cooking spray
  • Small mixing bowl
  • Large mixing bowl
  • Stirring utensil
  • Spoon
  • Optional: Food processor
  • Measurements: 1/4 tsp, 1/2 tsp, 1 tsp, 1/4 cup, 1/3 cup, 1 cup
chocolate muffin top

How to make healthy chocolate zucchini muffins

If you’ve ever made muffins before, you probably know that it’s not too complicated. Simply mix the ingredients together, spoon the batter into muffin liners, and bake! This recipe should take about a half an hour from start to finish.

To make healthy chocolate zucchini muffins, start by preheating the oven to 350F and lining a muffin tin with cupcake liners. I like to spray the liners with non-stick to be extra careful and ensure that not a single crumb will get left behind.

In a small bowl, whisk the almond flour, cocoa powder, baking soda, and salt together. Set it aside.

Then, in a large bowl, whisk the eggs. Add the coconut oil and maple syrup, and then stir until everything is well combined.

Add the dry ingredients to the wet, and mix everything together.

Fold in the zucchini, followed by half of the chocolate chips.

Scoop the batter into the muffin tins, filling each one 3/4 of the way. Top the batter with the remaining half of the chocolate chips for a delicious chocolatey top layer.

Bake for 19-21 minutes, or until a toothpick inserted in the middle comes out clean.

Enjoy!

Missing an ingredient? Try this!

If you find yourself an ingredient or two short, you may be able to get away with using an easy swap. Here are some common replacements for the coconut oil, maple syrup, eggs, and chocolate chips!

  • Coconut oil: Canola, vegetable, or any similar high-fat oil will work to replace coconut oil. Use a 1:1 ratio.
  • Maple syrup: You can use molasses or honey in place of maple syrup. Start with a small amount and add more to taste.
  • Chocolate chips: Don’t have any chocolate chips on hand? Simply leave them out! A second option is to use any candy or chocolate that you have on deck by chopping it up into small chunks.
muffin with peanut butter

More muffin ideas from Erin Lives Whole

In the mood for some more muffin ideas? You’ll want to try these! Each recipe is made with simple, easy ingredients.

  • Sweet Potato Muffins
  • Paleo Pumpkin Muffins
  • Lemon Poppy Seed Muffins
  • Strawberry Banana Muffins
  • Lemon Blueberry Muffins
chocolate zucchini muffins
chocolate zucchini muffins
5 Stars 4 Stars 3 Stars 2 Stars 1 Star 4.9 from 87 reviews

Gluten Free Chocolate Zucchini Muffins

An easy and healthy recipe for gluten free chocolate zucchini muffins, made with low carb ingredients like almond flour. These double chocolate muffins are moist, fluffy, and perfect for kids and adults alike!

Prep: 10 Cook: 20 Total: 30 minutes
Yield 12 muffins 1x
Scale
Print Pin it Rate

Ingredients

  • 2 cups almond flour
  • 1/3 cup cocoa powder
  • 1/2 tsp baking soda
  • 1/4 tsp salt
  • 3 eggs
  • 1/4 cup coconut oil – melted
  • 1/3 cup maple syrup
  • 1 tsp vanilla
  • 1 cup finely shredded zucchini, then squeezed in paper towel to release extra moisture.
  • 1 cup chocolate chips

Instructions

  1. Preheat oven to 350F and line muffin tin with cupcake liners or non stick spray.
  2. In a small bowl, whisk together almond flour, cocoa powder, baking soda, and salt. Set aside.
  3. In a large bowl, whisk eggs. Add in coconut oil,  maple syrup, and vanilla, and stir till well combined.
  4. Add dry ingredients to wet ingredients.
  5. Fold in zucchini, and then half of the chocolate chips.
  6. Scoop in muffin tin until 3/4 full, topping with remaining half of chocolate chips.
  7. Bake for 19-21 minutes or until toothpick inserted in middle comes out clean.
  8. Enjoy!
Author: Erin Antoniak Category: gluten-free, dessert, breakfast, snack, paleo
chocolate zucchini muffins

Did you make this?

Leave a comment below and tag @erinliveswhole on social media!

erinliveswhole

There may be affiliate links in this post! By purchasing a product I recommend, I may receive a small compensation. However, I only recommend products I absolutely love and use myself. Thank you for supporting Erin Lives Whole, it helps keep this blog afloat 🙂

You May Also Like...

  • stack of zucchini muffins
    Healthy Zucchini Muffins
  • half of pumpkin muffin
    The Best Healthy Pumpkin Muffins
  • paleo lemon blueberry muffins
    Paleo Lemon Blueberry Muffins
  • stack of zucchini muffins
    Healthy Zucchini Muffins
Previous Post
Next Post

Reader Interactions

Leave a Comment Cancel reply

Have a question? Use the form below to submit your question or comment. I love seeing what you made!

Recipe rating 5 Stars 4 Stars 3 Stars 2 Stars 1 Star
Recipe Rating




  1. Danielle says

    Posted on 9/15 at 2:22 am

    2nd time that I have made these:)
    Thank you for sharing this recipe. A great way to use all that zucchini and my family approves too!

    Reply
    • Erin says

      Posted on 9/15 at 5:55 pm

      Hi Danielle, so happy you all love them so much!! 🙂

      Reply
  2. Catherine says

    Posted on 8/26 at 10:11 pm

    Soooo good. These came out so moist and chocolatey. My whole family loved them. Will definitely make these often.

    Reply
    • Erin says

      Posted on 8/27 at 2:48 pm

      Hi Catherine, so happy they were a hit!! 🙂

      Reply
  3. Michelle Tamblyn says

    Posted on 8/17 at 6:35 pm

    Delicious and moist! I like hidden vegetables too 😉

    Reply
    • Erin says

      Posted on 8/18 at 6:56 pm

      Hi Michelle, so glad you loved them!!

      Reply
  4. Marta says

    Posted on 8/7 at 5:11 pm

    I want to love this recipe but mine turned out super dry and not moist at all and I didn’t skip out on any ingredients. What could have gone wrong? The batter was not liquidy when I mixed wet and dry ingredients.

    Reply
    • Kayla says

      Posted on 8/31 at 6:34 pm

      I had the same problem. I know i did use gluten free flour because I can’t have almond flour. I actually didn’t drain the zuchinni because it was very dry. They taste pretty doughy for me also

      Reply
  5. Rachael says

    Posted on 8/6 at 6:09 pm

    I added carrots, cinnamon, slivered almonds and organic apple sauce since I didnt have ant coconut oil on hand. They were moist and delicious!

    Reply
    • Erin says

      Posted on 8/7 at 2:05 pm

      Hi Rachel, so happy you loved them and made them your own! 🙂

      Reply
  6. Erin Gerlach says

    Posted on 8/3 at 9:52 am

    These are SO good! I cut down the amount of chocolate chips, using 1/4 mini dairy free, semi sweet chocolate chips in the batter and then topping them with 5-6 mini chocolate chips and 5-6 mini white chocolate chips. My picky kids also loved them!

    Reply
    • Erin says

      Posted on 8/5 at 1:38 pm

      Hi Erin, so glad you all loved them and made them your own! 🙂

      Reply
  7. Ruth says

    Posted on 6/27 at 3:16 pm

    Hi, I just have a question. How do you storage the muffins? You keep in room temperature? Or in the fridge?

    Reply
    • Erin says

      Posted on 6/30 at 2:51 pm

      Hi Ruth, you can store them in an airtight container at room temperature. Let me know how yours come out!

      Reply
  8. Kim says

    Posted on 3/1 at 12:23 pm

    Hi I tried These little beauties were amazing super easy super moist. I did add coconut. Turned out amazing give it a try.😊will be making another batch

    Reply
    • Erin says

      Posted on 3/12 at 8:58 pm

      Hi Kim, so happy you loved them!! 🙂

      Reply
  9. Serena says

    Posted on 2/10 at 12:54 pm

    Finally commenting, we make these at least once a week for the last year. My kids 2-14 love them. My husband loves them. Our co-workers request them. My breastfeeding group adores them. There’s always a couple dozen in our freezer for emergencies.

    Reply
    • Erin says

      Posted on 2/11 at 4:54 pm

      Hi Serena, so happy they’re a huge hit!!

      Reply
  10. Carlie says

    Posted on 11/28 at 5:11 pm

    I love this recipe! So easy to prep and delicious. I’m not sure if it is my oven, but I had to cook them for over 30+ minutes so the inside was no mushy and falling apart. Could just be my oven, but cook time was a lot more for me!

    Reply
    • Erin says

      Posted on 12/1 at 11:15 am

      Hi Carlie, so happy you liked them and hmm yes, it could be. If you want to triple check, buy an oven thermometer and you can see the true internal temp. 🙂

      Reply
  11. Lisa says

    Posted on 11/28 at 3:36 pm

    These are incredible. Theyve become my go to and people are now asking me to bring them to events. Win!

    Reply
    • Erin says

      Posted on 12/1 at 11:14 am

      Hi Lisa, so happy everyone enjoyed them!!

      Reply
  12. D says

    Posted on 10/7 at 4:43 pm

    This recipe is one of my new favorites! It’s hard to find a good one, and especially one that stays moist. I can’t have egg, so replaced it with Chia Eggs, and added 1 tsp of Physillium Husk. I also exclude the chocolate chips because the cocoa is good enough for me 🙂

    Reply
    • Erin says

      Posted on 10/10 at 11:15 am

      Hi, so happy you love them so much and made them your own!! 🙂

      Reply
  13. M says

    Posted on 10/6 at 6:32 pm

    When I mixed the dry into the wet ingredients, it was super dry and stiff. I had to add at least 1/2 cup water to moisten it enough to stir. Seems to not have enough wet ingredients or too much dry ingredients.

    Reply
  14. Jen says

    Posted on 8/31 at 2:39 pm

    These are delicious. I had a crew of 6 kids over here and these were devoured and the recipe has been requested and I have been asked multiple times to make them again. So I’m making them again now! So good. The kids had no idea this was actually healthy for them.

    Reply
    • Erin says

      Posted on 9/5 at 11:24 am

      Hi Jen, so happy everyone loved the muffins so much! 🙂

      Reply
  15. Courtney says

    Posted on 8/28 at 9:54 am

    Was happy to find a recipe that didn’t use GF flour mix. Thanks Erin! These were nice and simple for zucchini season. Should have made a double batch 😉

    Reply
    • Erin says

      Posted on 8/28 at 5:20 pm

      Hi Courtney, so happy you loved them!!

      Reply
    • Karen says

      Posted on 8/15 at 10:27 pm

      We live at a high altitude, nearly 7000ft, and I had no trouble with dryness of the batter and baking time was as stated. They turned out wonderfully and everyone who has tried them, loves them. Will definitely be a staple in our house

      Reply
      • Erin says

        Posted on 8/18 at 5:55 pm

        Hi Karen, so happy they were a hit!! 🙂

  16. Audrey says

    Posted on 6/9 at 6:07 pm

    I make these whenever I need chocolate muffins for our girls. So moist, flavorful and grain-free!

    Reply
    • Erin says

      Posted on 6/11 at 4:30 pm

      Hi Audrey, so happy you love them!!

      Reply
  17. Monique says

    Posted on 4/30 at 12:50 pm

    Erin does it again !! Omg these are delicious!! I used Ghirardelli 100% cocoa and 53% dark chocolate chips. My lord! These are magnificent.. and the almond flour my heavens! Erin you’re amazing! Every receipe
    I’ve tried on your page is 100% amazing.

    I appreciate your creativity and commitment to putting out some amazing receipes to share with us!

    Reply
    • Erin says

      Posted on 5/1 at 8:29 pm

      Hi Monique, so happy you loved them so much! 🙂

      Reply
  18. Ann says

    Posted on 4/15 at 11:41 am

    Hi Erin,
    I’m not sure what happened, but as soon as I combined my dry and wet ingredients the batter turned into cookie dough consistency. Would love some troubleshooting on this! Otherwise the flavours were great, would love to make it again with the right batter consistency!

    Reply
  19. Diana says

    Posted on 2/7 at 9:32 pm

    These healthy muffins are so moist and delicious! Tonight I made a double batch. Next time I will make them in quadruple batches and freeze some. Truly a dream come true for a chocoholic like me 🙂

    Reply
    • Erin says

      Posted on 2/8 at 12:01 pm

      Hi Diana, so happy you love them so much!! 🙂

      Reply
  20. Marisa says

    Posted on 1/9 at 7:53 pm

    These are literally the best muffins. Will make over and over again!

    Reply
    • Erin says

      Posted on 1/12 at 10:09 pm

      Hi Marisa, so happy you loved them so much!!

      Reply
    • Diana says

      Posted on 2/7 at 9:37 pm

      I totally agree with you Marisa!
      I made these tonight and have found my new healthy chocolate treat!

      Reply
      • Erin says

        Posted on 2/8 at 12:01 pm

        Hi Diana, so glad you loved them!! 🙂

Older Comments
Newer Comments

Primary Sidebar

erin in front of a building

Hey there!

I’m Erin. Creator of Erin Lives Whole, a food blog with delicious and easy healthy recipes that will leave you feeling good. We’ve got everything from wholesome baked goods to comforting savory dishes. I can’t wait to see what you whip up! Read More...

grocery lists

Shop My Grocery Downloads

Do you head to the grocery store and feel overwhelmed with all of the options? Well, I've created FIVE downloadable and printable grocery lists from five different and popular grocery stores. All of my absolute must haves from Whole Foods, Target, a regular grocer, Trader Joe's, and Costco!

Shop Now

Popular Posts

chickpea brownie on a tray

Chickpea Brownies

bite out of healthy cookie dough ball

Healthy Cookie Dough Balls

cauliflower wings on plate

Buffalo Cauliflower Wings

pouring syrup on stack of oatmeal blender pancakes

Oatmeal Blender Pancakes

Trending Recipes

avocado corn salad

Summer Avocado Corn Salad

cilantro lime shrimp on plate

Cilantro Lime Shrimp with Coconut Cauliflower Rice

paleo cookie skillet with ice cream

Healthy Cookie Skillet

banana bread muffin on a rack

Paleo Banana Bread Muffins

Featured On

good housekeeping logo
parade logo
feed feed logo
business insider logo
everyday health logo
country living logo
bar desserts
truffles
bar desserts
bar desserts
muffins
vanilla birthday cake with chocolate icing

Get latest updates To your inbox!

Back to Top
© 2026 Erin Lives Whole
  • Privacy Policy
Site Credits Designed by Melissa Rose Design Developed by Once Coupled
paleo chocolate zucchini muffin