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A cross between a dessert and a nutritious breakfast, these healthy pumpkin muffins are completely gluten-free! The fresh pumpkin puree and chocolate chips elevate these muffins to icon status.

Sweet healthy pumpkin muffins
These healthy pumpkin muffins are the perfect things to make for a fall snack, portable breakfast, or autumn brunch. They are sweet while not wreaking havoc on your blood sugar.
These muffins are never going to let you down. I mean, you will know they are going to be perfect right away because the pumpkin batter is fluffy and thick. You can tell that when you are pouring them into your muffin tin, these will be the softest pumpkin muffins you have ever had!
I think these pumpkin muffins rival the ones from Dunkin’ – while being better for you at the same time. These are perfectly soft, full of pumpkin spice, fluffy, and just so freaking good that you will want to eat them for breakfast every single day.

Ingredients in these pumpkin oat muffins
The ingredients in these muffins are the best because they are simple and most likely ones that you already have on hand in your pantry. Baking can be really easy if you allow it to be!
I love to use recipes that don’t require fancy ingredients or anything that you wouldn’t already have at home. All you really need for these muffins:
- Oat Flour– Oats are a heart-healthy whole grain. You’ll need 2 cups of oat flour.
- Pumpkin Puree – Either use fresh pumpkin puree from your Jack-O-Lantern or add some from a can, but either way, use 1 cup.
- Maple Syrup – Sweeten the muffins naturally with 1/3 a cup of real maple syrup.
- Eggs – These are an emulsifier, so you’ll use 2 large eggs.
- Coconut Oil – or Other Oil of Choice – Melt 1/2 a cup of your favorite type of healthy oil.
- Baking Soda + Powder – Combine 1 teaspoon of baking powder with 1/2 a teaspoon of baking soda for the fluffiest muffins.
- Vanilla – Pure vanilla extract adds deeper and richer flavors to the muffins, use one teaspoon.
- Pumpkin Pie Spice – Use some premade pumpkin pie spice to really make them taste amazing – about two teaspoons.
- Chocolate Chips – These chocolate chips are optional. If you want to use them, add about one cup.

Kitchen tools required
You don’t need any fancy kitchen gadgets to make this simple pumpkin muffin recipe. Grab the following tools before you begin.
- Muffin Tin
- Muffin Liners
- Large Bowl
- Whisk
- Small Bowl
- Wooden Spoon
For measuring, you will need 1 cup, 1/2 cup, 1/3 cup, 1 teaspoon, and 1/2 teaspoon.

How to make the best pumpkin muffins
These best-ever healthy pumpkin muffins are so easy to make. You’ll want to start by making homemade oat flour which is way easier than it sounds. No fancy mills or grinding machines here, all you need is a blender!
Just throw some oats into a blender and pulse for 10 seconds or so until your oats are finely ground into flour.
Tip: Always measure the amount of oats you need after grinding your oats up because the measurement can change.
If you already have oat flour, you can skip this step and move directly to mixing the pumpkin muffin batter.
Put the oat flour aside and whisk together your eggs, oil, pumpkin, maple syrup, and vanilla until well combined.
Mix the oat flour, baking powder, baking soda, salt, and cinnamon in another bowl.
Add the dry ingredients into the wet ingredients and stir until completely combined. Then add in any mix-ins you want! I love adding chocolate chips or pecans to my pumpkin muffins. I even save some to put on top!
Pour batter into a lined and greased muffin tin, top with a little extra chocolate and crushed nuts if desired, and bake! Bake them until you insert a toothpick into the middle, and it comes out clean.

Recipe Tips
Here are some questions people often ask about making pumpkin muffins. If you don’t see your question in this list, please leave it in the comments.
What other ingredients can I add to these oat flour pumpkin muffins?
You could add some cocoa powder to the muffins to make chocolate pumpkin muffins. Instead of chocolate chips, use white chocolate chips.
Should I make my own homemade oat powder?
This is entirely up to you. Some people like to make their own oat powder by pureeing rolled oats because it is less processed. It could be cheaper to make your own oat powder, especially if you buy rolled oats in bulk.
Can I turn this into a loaf of quick bread?
Yes, you can easily place the batter into a prepared loaf pan and make healthy pumpkin bread. You will have to adjust the baking time because it will take longer for the bread to bake.
Are these pumpkin muffins keto-friendly?
No, these muffins are not good to eat on a low-carb diet. The oat flour makes them much too high in carbs. Plus, the maple syrup increase that number even more. I suggest looking for a muffin recipe that uses either almond flour or coconut flour and is sweetened with a sugar substitute.
Storing leftovers
Storing muffins is simple. We like to let our muffins sit at room temperature in a sealed Tupperware container for up to four days. After that, we will do one of two things to ensure that they are stored properly – store them in the freezer or the refrigerator.
Freeze the muffins
Once cooled, wrap them up individually in plastic wrap and place them in a gallon Ziploc bag. This makes it easier to pull them out individually. Store them in the freezer for up to 6 months. When you are ready to eat them again, just let them thaw naturally in the refrigerator overnight.
Refrigerate them
This will increase the shelf life to longer than four days. Just stick the sealed, airtight container right into your fridge, and you will be good to go! These muffins will last about a week in the refrigerator.
If you liked this recipe, you’ll want to try these!
If you make this recipe, be sure to comment below and let me know how it was! Also tag @erinliveswhole on Instagram and use the hashtag #erinliveswhole so I can see it and feature you!

If you tried this recipe or any other recipes on my blog, please leave a 🌟 star rating and let me know how it went in the 📝 comments below. Follow @erinliveswhole on Instagram and tag me in any of the recipes you make so I can repost them!
The Best Healthy Pumpkin Muffins
Healthy pumpkin muffins are easy to make and made totally gluten free with certified gluten free oatmeal, fresh pumpkin puree, and a handful of chocolate chips! Toddlers, kids, teenagers, and adults all love these for a simple snack!
Ingredients
- 1 cup pumpkin puree
- 1/2 cup coconut oil, melted
- 2 eggs
- 1/3 cup maple syrup
- 1 tsp vanilla
- 2 cups oat flour , loosely scooped, not packed. gluten-free if necessary. see notes for homemade.
- 1 tsp baking powder
- 1/2 tsp baking soda
- 1/2 tsp salt
- 2 tsp pumpkin pie spice
- Optional: chocolate chips /chopped pecans – about 1 cup.
Instructions
- Preheat oven to 350F and line a muffin tin with liners and nonstick spray.
- In a large bowl, whisk pumpkin, coconut oil, eggs, maple syrup, and vanilla until well combined.
- In a small bowl, mix oat flour, baking powder, baking soda, salt and pumpkin pie spice.
- Add dry ingredients to wet and stir until combined. Stir in any mix-ins.
- Scoop into muffin tin and bake for about 22 minutes or until toothpick inserted comes out clean.
- Enjoy!
Notes
Make homemade oat flour by grinding oatmeal until very fine in a blender, measuring after blended.
There may be affiliate links in this post! By purchasing a product I recommend, I may receive a small compensation. However, I only recommend products I absolutely love and use myself. Thank you for supporting Erin Lives Whole, it helps keep this blog afloat 🙂





Judy says
This batter was so thick and sticky. No way I could pour it into muffin cups!! What did I do wrong? They came out terrible. I had to scoop the sticky batter into the muffin tins, and once baked they never cooking into a light fluffy muffin.i had to throw them all out.
Joy says
Same!
Sarah says
I made these just as the recipe stated! I did half the batch in a mini silcone muffin tray for a staff meeting for ease of sharing! Great, tasty and easy! Thanks!
Erin says
Hi Sarah, so happy you loved them and made them your own!! 🙂
Colleen says
These are delicious and super simple to make! Due to a coconut allergy I subbed with olive oil but other than that use the recipe as written and it was wonderful. Thank you so much for sharing your terrific recipe!
Erin says
Hi Colleen, so happy you enjoyed them!!
Anne says
What’s a good sun for coconut oil?! Thanks!! Cant wait to try!
Erin says
Hi Anne, you can use another neutral oil like avocado oil! Let me know how your muffins come out!!
Rachel says
These are SO good! I’ve many other pumpkin muffins on your blog and they are all amazing. I used white flour here and they came out great.
Erin says
Hi Rachel, so glad you loved them! 🙂
Lacy L says
Very good and tasty! I subbed oat flour for regular flour and used avocado oil and they came out great!
Erin says
Hi Lacy, so happy you liked them and made them your own! 🙂
Amy says
I noticed that your pumpkin bread recipe is very similar except that it uses wheat flour instead of oat flour. Could I use oat flour in the bread recipe?
Emily says
my mommy makes them a lot and we really like them!!!!!!!!!
Erin says
Hi Emily, so happy you love them!!
Kayleigh says
Is the dough supposed to be on the dryer side? I substituted the oat flour for coconut flour & just threw them in the oven but the dough is more separated then runny. Hopefully they come out good! lol
Erin says
Hi Kayleigh, unfortunately, coconut flour is not a good substitute for oat flour – it is way more absorbent and they will be very dry. A better sub would have been white flour! 🙂
Anna Schapiro says
Soooo delicious! I substituted gluten free flour bc I couldn’t find oat flour. Should the proportions be the same?
Erin says
Hi Anna, that should be fine! You can also make homemade oat flour by grinding oatmeal until very fine in a blender, measuring after blended if that helps too!
Emily says
These look so good! Can I use plain all purpose flour instead of oat flour?
Erin says
Hi Emily, you can try it out! Should work ok! Let me know how they come out!!
Amanda says
These have been super for a sweet snack, and love that they’re on the healthier side. I subbed date syrup for maple because its hard to find & expensive where I live, and olive oil for coconut oil – works great. They’ve kept really well in the fridge all week… if they last that long! Thanks for this recipe – its a keeper.
Erin says
Hi Amanda, so glad you loved them and made them your own!! 🙂
Valerie says
Can you sub almond flour for oat flour?
Erin says
Hi Valerie, it won’t work quite the same as you will need more almond flour because it is less absorbent, but you can give it a try! Let me know how they come out!!
Ali says
This recipe was so easy for being a muffin from scratch. And the outcome – the best muffins I have ever made! They are delicious and 22 minutes is the perfect baking time!
Erin says
Hi Ali, so happy you loved them so much! 🙂
Mandy says
I never leave comments on recipes, but these are too good not to! I have made them weekly for years and they are loved by toddlers and adults alike. So delicious and easy to make. I love that they are gluten and dairy free, but you would never know. A family favorite for sure!
Erin says
Hi Mandy, so happy everyone loves them so much!! 🙂
Hannah says
Can these muffins be frozen ?
If so for how long recommended ?
Erin says
Hi Hannah, yes! Once cooled, wrap them up individually in plastic wrap and place them in a gallon Ziploc bag. This makes it easier to pull them out individually. Store them in the freezer for up to 6 months. When you are ready to eat them again, just let them thaw naturally in the refrigerator overnight. All storage instructions are at the bottom of the post! 🙂
Abby says
These were so good I’m so excited to try again! Just realized I don’t have maple syrup this time. Could I substitute with granulated sugar or possibly honey? Thank you!
Erin says
Hi Abby, yes, and honey works!! 🙂
Dominika fedejko says
So yummy! Was a little hesitant about the oats
Erin says
Hi Dominika, so glad you loved them!! 🙂
Kerry Raffetto says
I can’t count how many times we’ve made these!! Truly don’t taste healthy at all which is the best part. We make these year round whenever we are having a sweet craving. I send this recipe to friends all the time!
Erin says
Hi Kerry, so happy you love them so much!! 🙂
Kelsi Van Veen says
My whole family absolutely loves these! I make them all the time. We sometimes make these into mini muffins for our 7 month old – we just omit the chocolate chips and cut the bake time in half. So so good
Erin says
Hi Kelsi, so happy you all enjoyed them and made them your own! 🙂