• Skip to primary navigation
  • Skip to main content
  • Skip to primary sidebar
freebie! download my top 8 dessert recipe ebook

Join my newsletter for latest recipes!

Erin Lives Whole

Healthy Eats + Delicious Treats

  • Recipe Index
    • Course
      • Appetizers
      • Breakfast
      • Lunch & Dinner
      • Dessert
      • Soup
      • Sides
      • Drinks
      • Snacks
      • Sauces & Dips
    • Dessert Type
      • Bars & Balls
      • Breads & Muffins
      • Brownies
      • Cakes
      • Candy
      • Cookies
      • Frozen
      • Pie & Cobbler
      • Other
    • Diet
      • Dairy-Free
      • Gluten-Free
      • Nut-Free
      • Paleo Friendly
      • Vegan
      • Vegetarian
    • Method
      • 30 Minute or Less
      • Air Fryer
      • Grill
      • Instant Pot
      • Meal Prep
      • No Bake
      • One Pot/Pan
      • Oven
      • Stove Top
    • Season
      • Fall
      • Holiday
      • Winter
      • Spring
      • Summer
    • Recipe Filter
    • All Recipes
  • Ebooks
  • Shop
  • Lifestyle
  • About
    • Work With Me
    • Contact
  • Subscribe to receive latest recipes

    Join my newsletter for latest recipes!

  • Browse by Diet
    • Gluten-Free
    • Dairy-Free
    • Nut-Free
    • Paleo Friendly
    • Vegan
    • Vegetarian
  • Breakfast
  • Lunch & Dinner
  • Drinks
  • Snacks
  • Dessert
  • Appetizers
Home Recipes By Meal Dessert

The Best Healthy Pumpkin Muffins

121 Reviews Recipe
gf df nf
By: Erin Antoniak • Updated On May 23, 2026

This post may contain affiliate links. Please read my disclosure policy.

A cross between a dessert and a nutritious breakfast, these healthy pumpkin muffins are completely gluten-free! The fresh pumpkin puree and chocolate chips elevate these muffins to icon status.

bite into pumpkin muffin

Sweet healthy pumpkin muffins

These healthy pumpkin muffins are the perfect things to make for a fall snack, portable breakfast, or autumn brunch. They are sweet while not wreaking havoc on your blood sugar.

These muffins are never going to let you down. I mean, you will know they are going to be perfect right away because the pumpkin batter is fluffy and thick. You can tell that when you are pouring them into your muffin tin, these will be the softest pumpkin muffins you have ever had!

I think these pumpkin muffins rival the ones from Dunkin’ – while being better for you at the same time. These are perfectly soft, full of pumpkin spice, fluffy, and just so freaking good that you will want to eat them for breakfast every single day.

overhead best healthy pumpkin muffin in tray

Ingredients in these pumpkin oat muffins

The ingredients in these muffins are the best because they are simple and most likely ones that you already have on hand in your pantry. Baking can be really easy if you allow it to be!

I love to use recipes that don’t require fancy ingredients or anything that you wouldn’t already have at home. All you really need for these muffins:

  • Oat Flour– Oats are a heart-healthy whole grain. You’ll need 2 cups of oat flour.
  • Pumpkin Puree – Either use fresh pumpkin puree from your Jack-O-Lantern or add some from a can, but either way, use 1 cup.
  • Maple Syrup – Sweeten the muffins naturally with 1/3 a cup of real maple syrup.
  • Eggs – These are an emulsifier, so you’ll use 2 large eggs.
  • Coconut Oil – or Other Oil of Choice – Melt 1/2 a cup of your favorite type of healthy oil.
  • Baking Soda + Powder – Combine 1 teaspoon of baking powder with 1/2 a teaspoon of baking soda for the fluffiest muffins.
  • Vanilla – Pure vanilla extract adds deeper and richer flavors to the muffins, use one teaspoon.
  • Pumpkin Pie Spice – Use some premade pumpkin pie spice to really make them taste amazing – about two teaspoons.
  • Chocolate Chips – These chocolate chips are optional. If you want to use them, add about one cup.
the best healthy pumpkin muffins

Kitchen tools required

You don’t need any fancy kitchen gadgets to make this simple pumpkin muffin recipe. Grab the following tools before you begin.

  • Muffin Tin
  • Muffin Liners
  • Large Bowl
  • Whisk
  • Small Bowl
  • Wooden Spoon

For measuring, you will need 1 cup, 1/2 cup, 1/3 cup, 1 teaspoon, and 1/2 teaspoon.

half of pumpkin muffin

How to make the best pumpkin muffins

These best-ever healthy pumpkin muffins are so easy to make. You’ll want to start by making homemade oat flour which is way easier than it sounds. No fancy mills or grinding machines here, all you need is a blender!

Just throw some oats into a blender and pulse for 10 seconds or so until your oats are finely ground into flour.

Tip: Always measure the amount of oats you need after grinding your oats up because the measurement can change.

If you already have oat flour, you can skip this step and move directly to mixing the pumpkin muffin batter.

Put the oat flour aside and whisk together your eggs, oil, pumpkin, maple syrup, and vanilla until well combined.

Mix the oat flour, baking powder, baking soda, salt, and cinnamon in another bowl.

Add the dry ingredients into the wet ingredients and stir until completely combined. Then add in any mix-ins you want! I love adding chocolate chips or pecans to my pumpkin muffins. I even save some to put on top!

Pour batter into a lined and greased muffin tin, top with a little extra chocolate and crushed nuts if desired, and bake! Bake them until you insert a toothpick into the middle, and it comes out clean.

half of pumpkin muffin

Recipe Tips

Here are some questions people often ask about making pumpkin muffins. If you don’t see your question in this list, please leave it in the comments.

What other ingredients can I add to these oat flour pumpkin muffins?

You could add some cocoa powder to the muffins to make chocolate pumpkin muffins. Instead of chocolate chips, use white chocolate chips.

Should I make my own homemade oat powder?

This is entirely up to you. Some people like to make their own oat powder by pureeing rolled oats because it is less processed. It could be cheaper to make your own oat powder, especially if you buy rolled oats in bulk.

Can I turn this into a loaf of quick bread?

Yes, you can easily place the batter into a prepared loaf pan and make healthy pumpkin bread. You will have to adjust the baking time because it will take longer for the bread to bake.

Are these pumpkin muffins keto-friendly?

No, these muffins are not good to eat on a low-carb diet. The oat flour makes them much too high in carbs. Plus, the maple syrup increase that number even more. I suggest looking for a muffin recipe that uses either almond flour or coconut flour and is sweetened with a sugar substitute.

Storing leftovers

Storing muffins is simple. We like to let our muffins sit at room temperature in a sealed Tupperware container for up to four days. After that, we will do one of two things to ensure that they are stored properly – store them in the freezer or the refrigerator.

Freeze the muffins

Once cooled, wrap them up individually in plastic wrap and place them in a gallon Ziploc bag. This makes it easier to pull them out individually. Store them in the freezer for up to 6 months. When you are ready to eat them again, just let them thaw naturally in the refrigerator overnight.

Refrigerate them

This will increase the shelf life to longer than four days. Just stick the sealed, airtight container right into your fridge, and you will be good to go! These muffins will last about a week in the refrigerator.

If you liked this recipe, you’ll want to try these!

  • Paleo Banana Bread Muffins
  • Chocolate Zucchini Muffins
  • Paleo Pumpkin Bread

If you make this recipe, be sure to comment below and let me know how it was! Also tag @erinliveswhole on Instagram and use the hashtag #erinliveswhole so I can see it and feature you!

healthy pumpkin muffins

If you tried this recipe or any other recipes on my blog, please leave a 🌟 star rating and let me know how it went in the 📝 comments below. Follow @erinliveswhole on Instagram and tag me in any of the recipes you make so I can repost them!

over head pumpkni muffins
5 Stars 4 Stars 3 Stars 2 Stars 1 Star 4.9 from 121 reviews

The Best Healthy Pumpkin Muffins

Healthy pumpkin muffins are easy to make and made totally gluten free with certified gluten free oatmeal, fresh pumpkin puree, and a handful of chocolate chips! Toddlers, kids, teenagers, and adults all love these for a simple snack!

Prep: 10 Cook: 20 Total: 30 minutes
Yield 12 muffins 1x
Scale
Print Pin it Rate

Ingredients

  • 1 cup pumpkin puree
  • 1/2 cup coconut oil, melted
  • 2 eggs
  • 1/3 cup maple syrup
  • 1 tsp vanilla
  • 2 cups oat flour , loosely scooped, not packed. gluten-free if necessary. see notes for homemade.
  • 1 tsp baking powder
  • 1/2 tsp baking soda
  • 1/2 tsp salt
  • 2 tsp pumpkin pie spice
  • Optional: chocolate chips /chopped pecans – about 1 cup.

Instructions

  1. Preheat oven to 350F and line a muffin tin with liners and nonstick spray.
  2. In a large bowl, whisk pumpkin, coconut oil, eggs, maple syrup, and vanilla until well combined.
  3. In a small bowl, mix oat flour, baking powder, baking soda, salt and pumpkin pie spice.
  4. Add dry ingredients to wet and stir until combined. Stir in any mix-ins.
  5. Scoop into muffin tin and bake for about 22 minutes or until toothpick inserted comes out clean.
  6. Enjoy!

Notes

Make homemade oat flour by grinding oatmeal until very fine in a blender, measuring after blended.

Author: Erin Antoniak Category: breakfast, gluten-free Method: oven
over head pumpkni muffins

Did you make this?

Leave a comment below and tag @erinliveswhole on social media!

erinliveswhole

There may be affiliate links in this post! By purchasing a product I recommend, I may receive a small compensation. However, I only recommend products I absolutely love and use myself. Thank you for supporting Erin Lives Whole, it helps keep this blog afloat 🙂

You May Also Like...

  • Pumpkin bread cut in slices
    Healthy Pumpkin Bread
  • paleo pumpkin bread
    Paleo Pumpkin Bread
  • paleo pumpkin muffin with liner
    Paleo Pumpkin Muffins
  • Healthy Pumpkin Oat Bread
Previous Post
Next Post

Reader Interactions

Leave a Comment Cancel reply

Have a question? Use the form below to submit your question or comment. I love seeing what you made!

Recipe rating 5 Stars 4 Stars 3 Stars 2 Stars 1 Star
Recipe Rating




  1. Judy says

    Posted on 11/22 at 11:28 am

    This batter was so thick and sticky. No way I could pour it into muffin cups!! What did I do wrong? They came out terrible. I had to scoop the sticky batter into the muffin tins, and once baked they never cooking into a light fluffy muffin.i had to throw them all out.

    Reply
    • Joy says

      Posted on 1/3 at 5:46 pm

      Same!

      Reply
  2. Sarah says

    Posted on 11/9 at 11:45 am

    I made these just as the recipe stated! I did half the batch in a mini silcone muffin tray for a staff meeting for ease of sharing! Great, tasty and easy! Thanks!

    Reply
    • Erin says

      Posted on 11/12 at 5:11 pm

      Hi Sarah, so happy you loved them and made them your own!! 🙂

      Reply
  3. Colleen says

    Posted on 11/6 at 3:55 pm

    These are delicious and super simple to make! Due to a coconut allergy I subbed with olive oil but other than that use the recipe as written and it was wonderful. Thank you so much for sharing your terrific recipe!

    Reply
    • Erin says

      Posted on 11/8 at 9:47 am

      Hi Colleen, so happy you enjoyed them!!

      Reply
  4. Anne says

    Posted on 10/31 at 9:11 am

    What’s a good sun for coconut oil?! Thanks!! Cant wait to try!

    Reply
    • Erin says

      Posted on 11/8 at 9:33 am

      Hi Anne, you can use another neutral oil like avocado oil! Let me know how your muffins come out!!

      Reply
  5. Rachel says

    Posted on 10/29 at 8:57 pm

    These are SO good! I’ve many other pumpkin muffins on your blog and they are all amazing. I used white flour here and they came out great.

    Reply
    • Erin says

      Posted on 10/30 at 12:46 pm

      Hi Rachel, so glad you loved them! 🙂

      Reply
  6. Lacy L says

    Posted on 10/27 at 11:39 am

    Very good and tasty! I subbed oat flour for regular flour and used avocado oil and they came out great!

    Reply
    • Erin says

      Posted on 10/29 at 1:39 pm

      Hi Lacy, so happy you liked them and made them your own! 🙂

      Reply
  7. Amy says

    Posted on 10/23 at 7:47 pm

    I noticed that your pumpkin bread recipe is very similar except that it uses wheat flour instead of oat flour. Could I use oat flour in the bread recipe?

    Reply
  8. Emily says

    Posted on 10/20 at 6:50 am

    my mommy makes them a lot and we really like them!!!!!!!!!

    Reply
    • Erin says

      Posted on 10/21 at 3:03 pm

      Hi Emily, so happy you love them!!

      Reply
  9. Kayleigh says

    Posted on 10/6 at 9:26 pm

    Is the dough supposed to be on the dryer side? I substituted the oat flour for coconut flour & just threw them in the oven but the dough is more separated then runny. Hopefully they come out good! lol

    Reply
    • Erin says

      Posted on 10/7 at 4:19 pm

      Hi Kayleigh, unfortunately, coconut flour is not a good substitute for oat flour – it is way more absorbent and they will be very dry. A better sub would have been white flour! 🙂

      Reply
  10. Anna Schapiro says

    Posted on 10/5 at 5:30 pm

    Soooo delicious! I substituted gluten free flour bc I couldn’t find oat flour. Should the proportions be the same?

    Reply
    • Erin says

      Posted on 10/7 at 3:19 pm

      Hi Anna, that should be fine! You can also make homemade oat flour by grinding oatmeal until very fine in a blender, measuring after blended if that helps too!

      Reply
  11. Emily says

    Posted on 9/30 at 11:16 am

    These look so good! Can I use plain all purpose flour instead of oat flour?

    Reply
    • Erin says

      Posted on 10/7 at 3:25 pm

      Hi Emily, you can try it out! Should work ok! Let me know how they come out!!

      Reply
  12. Amanda says

    Posted on 9/27 at 3:17 am

    These have been super for a sweet snack, and love that they’re on the healthier side. I subbed date syrup for maple because its hard to find & expensive where I live, and olive oil for coconut oil – works great. They’ve kept really well in the fridge all week… if they last that long! Thanks for this recipe – its a keeper.

    Reply
    • Erin says

      Posted on 10/2 at 7:58 pm

      Hi Amanda, so glad you loved them and made them your own!! 🙂

      Reply
  13. Valerie says

    Posted on 9/23 at 4:29 pm

    Can you sub almond flour for oat flour?

    Reply
    • Erin says

      Posted on 9/26 at 12:06 pm

      Hi Valerie, it won’t work quite the same as you will need more almond flour because it is less absorbent, but you can give it a try! Let me know how they come out!!

      Reply
  14. Ali says

    Posted on 9/19 at 7:17 pm

    This recipe was so easy for being a muffin from scratch. And the outcome – the best muffins I have ever made! They are delicious and 22 minutes is the perfect baking time!

    Reply
    • Erin says

      Posted on 9/22 at 5:54 pm

      Hi Ali, so happy you loved them so much! 🙂

      Reply
  15. Mandy says

    Posted on 9/11 at 11:32 am

    I never leave comments on recipes, but these are too good not to! I have made them weekly for years and they are loved by toddlers and adults alike. So delicious and easy to make. I love that they are gluten and dairy free, but you would never know. A family favorite for sure!

    Reply
    • Erin says

      Posted on 9/11 at 9:30 pm

      Hi Mandy, so happy everyone loves them so much!! 🙂

      Reply
  16. Hannah says

    Posted on 5/25 at 6:27 am

    Can these muffins be frozen ?
    If so for how long recommended ?

    Reply
    • Erin says

      Posted on 5/27 at 3:08 pm

      Hi Hannah, yes! Once cooled, wrap them up individually in plastic wrap and place them in a gallon Ziploc bag. This makes it easier to pull them out individually. Store them in the freezer for up to 6 months. When you are ready to eat them again, just let them thaw naturally in the refrigerator overnight. All storage instructions are at the bottom of the post! 🙂

      Reply
  17. Abby says

    Posted on 4/28 at 6:07 pm

    These were so good I’m so excited to try again! Just realized I don’t have maple syrup this time. Could I substitute with granulated sugar or possibly honey? Thank you!

    Reply
    • Erin says

      Posted on 5/1 at 6:58 pm

      Hi Abby, yes, and honey works!! 🙂

      Reply
  18. Dominika fedejko says

    Posted on 1/27 at 7:58 pm

    So yummy! Was a little hesitant about the oats

    Reply
    • Erin says

      Posted on 1/28 at 2:43 pm

      Hi Dominika, so glad you loved them!! 🙂

      Reply
  19. Kerry Raffetto says

    Posted on 1/26 at 5:44 pm

    I can’t count how many times we’ve made these!! Truly don’t taste healthy at all which is the best part. We make these year round whenever we are having a sweet craving. I send this recipe to friends all the time!

    Reply
    • Erin says

      Posted on 1/28 at 2:35 pm

      Hi Kerry, so happy you love them so much!! 🙂

      Reply
  20. Kelsi Van Veen says

    Posted on 12/7 at 1:08 pm

    My whole family absolutely loves these! I make them all the time. We sometimes make these into mini muffins for our 7 month old – we just omit the chocolate chips and cut the bake time in half. So so good

    Reply
    • Erin says

      Posted on 12/8 at 11:18 am

      Hi Kelsi, so happy you all enjoyed them and made them your own! 🙂

      Reply
Older Comments
Newer Comments

Primary Sidebar

erin in front of a building

Hey there!

I’m Erin. Creator of Erin Lives Whole, a food blog with delicious and easy healthy recipes that will leave you feeling good. We’ve got everything from wholesome baked goods to comforting savory dishes. I can’t wait to see what you whip up! Read More...

grocery lists

Shop My Grocery Downloads

Do you head to the grocery store and feel overwhelmed with all of the options? Well, I've created FIVE downloadable and printable grocery lists from five different and popular grocery stores. All of my absolute must haves from Whole Foods, Target, a regular grocer, Trader Joe's, and Costco!

Shop Now

Popular Posts

chickpea brownie on a tray

Chickpea Brownies

bite out of healthy cookie dough ball

Healthy Cookie Dough Balls

cauliflower wings on plate

Buffalo Cauliflower Wings

pouring syrup on stack of oatmeal blender pancakes

Oatmeal Blender Pancakes

Trending Recipes

avocado corn salad

Summer Avocado Corn Salad

cilantro lime shrimp on plate

Cilantro Lime Shrimp with Coconut Cauliflower Rice

paleo cookie skillet with ice cream

Healthy Cookie Skillet

banana bread muffin on a rack

Paleo Banana Bread Muffins

Featured On

good housekeeping logo
parade logo
feed feed logo
business insider logo
everyday health logo
country living logo
bar desserts
truffles
bar desserts
bar desserts
muffins
vanilla birthday cake with chocolate icing

Get latest updates To your inbox!

Back to Top
© 2026 Erin Lives Whole
  • Privacy Policy
Site Credits Designed by Melissa Rose Design Developed by Once Coupled
healthy pumpkin muffins