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Home Recipes By Meal Breakfast

Healthy Chocolate Zucchini Muffins

87 Reviews Recipe
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By: Erin Antoniak • Updated On January 29, 2023

This post may contain affiliate links. Please read my disclosure policy.

An easy and healthy recipe for gluten free chocolate zucchini muffins, made with low carb ingredients like almond flour. These double chocolate muffins are moist, fluffy, and perfect for kids and adults alike!

chocolate zucchini muffin

Delicious double chocolate zucchini muffins

These gluten free chocolate zucchini muffins may just be my new favorite breakfast ever. First off, who doesn’t want to eat chocolate for breakfast? Second off, they are loaded with healthy and wholesome ingredients like almond flour, maple syrup, and zucchini.

That’s right, we’re sneaking in some veggies! But, don’t worry. These muffins don’t taste healthy at all. The veggies actually add to the texture by providing a moist, fluffy consistency that makes them that much better.

I love baking with zucchini and have to share my Zucchini Protein Baked Oats too. They are a must bake.

chocolate muffin with peanut butter and chocolate chips and bite taken out of it

These are one of my favorite treats to make ahead of time for breakfast whenever I have a busy morning. If you’re whipping up an entire batch and you don’t need them all right away, just pop them in the freezer for later.

When you’re ready to dive in, defrost them on the counter or in the fridge and you’ve got yourself a homemade bakery style muffin in literally no time.

Bonus Tip: I’m known to slather one up with some peanut butter or almond butter, throw some extra chocolate chips on top, and dive in. 10/10 recommend!

Long story short, these treats are pure bliss.

chocolate muffin cut in half with zucchini shreds and chocolate chips

Ingredients used in chocolate chip zucchini muffins

This ingredients list is simple, easy, and filled with things you most likely already have in your pantry. I love when a recipe includes mostly staples, because it means I probably won’t need to make a trip to the grocery store. The simpler, the better!

Almond flour
I use almond flour in these muffins to make them completely gluten-free and low-carb. This ingredient doubles as my favorite healthy swap because it’s more nutrient-rich than other flours and helps to create moist and fluffy baked goods!

Cocoa powder
I like to use a dark or Dutch processed cocoa powder. In fact, my favorite type is the Whole Foods 365 brand because it provides the perfect amount of chocolate flavor! I often use this ingredient in my chocolate baked goods.

Coconut oil
Coconut oil is my go-to oil because it’s a great alternative to canola or vegetable oil. If you don’t like the flavor of coconut, use a refined option. The refined versions don’t come with a nutty taste, which is why I use that type in most of my recipes.

Maple syrup
By far my favorite non-refined, all-natural sweetener! I love to use this ingredient because it provides the perfect amount of sweet flavor.

Eggs
For this recipe, eggs help to create the correct consistency and contribute to the fluffy texture.

Zucchini
Feel free to keep the skin on your zucchini when shredding it. You can go for a fine shred by using a food processor, or skip that step if you prefer bigger zucchini chunks. I also like to lightly squeeze mine after shredding to discard the extra moisture.

Chocolate chips
The chocolate chips make this recipe complete! I use the dairy free type from Enjoy Life, but you can use whichever brand you prefer.

Tools needed to make this recipe

As far as kitchen items are concerned, you’ll need the following:

  • Muffin tin
  • Muffin liners
  • Non-stick cooking spray
  • Small mixing bowl
  • Large mixing bowl
  • Stirring utensil
  • Spoon
  • Optional: Food processor
  • Measurements: 1/4 tsp, 1/2 tsp, 1 tsp, 1/4 cup, 1/3 cup, 1 cup
chocolate muffin top

How to make healthy chocolate zucchini muffins

If you’ve ever made muffins before, you probably know that it’s not too complicated. Simply mix the ingredients together, spoon the batter into muffin liners, and bake! This recipe should take about a half an hour from start to finish.

To make healthy chocolate zucchini muffins, start by preheating the oven to 350F and lining a muffin tin with cupcake liners. I like to spray the liners with non-stick to be extra careful and ensure that not a single crumb will get left behind.

In a small bowl, whisk the almond flour, cocoa powder, baking soda, and salt together. Set it aside.

Then, in a large bowl, whisk the eggs. Add the coconut oil and maple syrup, and then stir until everything is well combined.

Add the dry ingredients to the wet, and mix everything together.

Fold in the zucchini, followed by half of the chocolate chips.

Scoop the batter into the muffin tins, filling each one 3/4 of the way. Top the batter with the remaining half of the chocolate chips for a delicious chocolatey top layer.

Bake for 19-21 minutes, or until a toothpick inserted in the middle comes out clean.

Enjoy!

Missing an ingredient? Try this!

If you find yourself an ingredient or two short, you may be able to get away with using an easy swap. Here are some common replacements for the coconut oil, maple syrup, eggs, and chocolate chips!

  • Coconut oil: Canola, vegetable, or any similar high-fat oil will work to replace coconut oil. Use a 1:1 ratio.
  • Maple syrup: You can use molasses or honey in place of maple syrup. Start with a small amount and add more to taste.
  • Chocolate chips: Don’t have any chocolate chips on hand? Simply leave them out! A second option is to use any candy or chocolate that you have on deck by chopping it up into small chunks.
muffin with peanut butter

More muffin ideas from Erin Lives Whole

In the mood for some more muffin ideas? You’ll want to try these! Each recipe is made with simple, easy ingredients.

  • Sweet Potato Muffins
  • Paleo Pumpkin Muffins
  • Lemon Poppy Seed Muffins
  • Strawberry Banana Muffins
  • Lemon Blueberry Muffins
chocolate zucchini muffins
chocolate zucchini muffins
5 Stars 4 Stars 3 Stars 2 Stars 1 Star 4.9 from 87 reviews

Gluten Free Chocolate Zucchini Muffins

An easy and healthy recipe for gluten free chocolate zucchini muffins, made with low carb ingredients like almond flour. These double chocolate muffins are moist, fluffy, and perfect for kids and adults alike!

Prep: 10 Cook: 20 Total: 30 minutes
Yield 12 muffins 1x
Scale
Print Pin it Rate

Ingredients

  • 2 cups almond flour
  • 1/3 cup cocoa powder
  • 1/2 tsp baking soda
  • 1/4 tsp salt
  • 3 eggs
  • 1/4 cup coconut oil – melted
  • 1/3 cup maple syrup
  • 1 tsp vanilla
  • 1 cup finely shredded zucchini, then squeezed in paper towel to release extra moisture.
  • 1 cup chocolate chips

Instructions

  1. Preheat oven to 350F and line muffin tin with cupcake liners or non stick spray.
  2. In a small bowl, whisk together almond flour, cocoa powder, baking soda, and salt. Set aside.
  3. In a large bowl, whisk eggs. Add in coconut oil,  maple syrup, and vanilla, and stir till well combined.
  4. Add dry ingredients to wet ingredients.
  5. Fold in zucchini, and then half of the chocolate chips.
  6. Scoop in muffin tin until 3/4 full, topping with remaining half of chocolate chips.
  7. Bake for 19-21 minutes or until toothpick inserted in middle comes out clean.
  8. Enjoy!
Author: Erin Antoniak Category: gluten-free, dessert, breakfast, snack, paleo
chocolate zucchini muffins

Did you make this?

Leave a comment below and tag @erinliveswhole on social media!

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There may be affiliate links in this post! By purchasing a product I recommend, I may receive a small compensation. However, I only recommend products I absolutely love and use myself. Thank you for supporting Erin Lives Whole, it helps keep this blog afloat 🙂

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Recipe Rating




  1. Abby says

    Posted on 3/10 at 1:59 pm

    I can’t believe I haven’t rated these yet! Been making them for months. Me and my two kids love them! The muffins are usually all gone without 2 days!!

    Reply
    • Erin says

      Posted on 8/7 at 12:13 am

      Hi Abby, I am so glad that my muffins are part of your baking routine!! So happy the three of you enjoy them! 🙂

      Reply
  2. Casey says

    Posted on 3/2 at 7:00 pm

    I don’t see where the vanilla is added. Unfortunately I didn’t realize till I popped them in the oven that I hadn’t added it. I specially went to the store and spent $18 on it, ahh well. I’m sure they’ll taste great!

    Reply
    • Erin says

      Posted on 8/9 at 8:02 pm

      Hi Casey, oh no! The vanilla was in step 3 with the other wet ingredients How did they come out? Hope you can also make them again with the vanilla!

      Reply
  3. Amy says

    Posted on 2/9 at 3:50 pm

    Is this recipe meant to be very dry? It doesn’t seem to be fake like at all, more of a cookie dough.

    Reply
    • Erin says

      Posted on 2/9 at 7:48 pm

      Hopefully you did not use coconut flour as they are not an even exchange. Other than that, Sounds like something must have been missing.

      Reply
  4. Amy says

    Posted on 2/9 at 3:02 pm

    Can I use coconut flour instead of almond flour?

    Reply
    • Erin says

      Posted on 2/9 at 7:48 pm

      NO! they are not an even exchange.

      Reply
  5. Sandra says

    Posted on 2/3 at 6:48 pm

    How long do these last, and can you freeze them?

    Reply
    • Erin says

      Posted on 2/4 at 8:13 pm

      4 days. Yes! Freeze them!

      Reply
      • Lori Ingle says

        Posted on 2/6 at 6:32 pm

        Your recipe was perfect as written and I had all the ingredients on hand, with the exception of the zucchini which i substituted yellow squash for. Just delicious and totally satisfies my sweet tooth. I even used Danette’s cacao bliss, a supposed “superfood” and it turned out awesome. This one’s a keeper!!

      • Erin says

        Posted on 2/9 at 7:48 pm

        SO happy that you love them!! Thank you for sharing!

  6. Bri says

    Posted on 1/23 at 1:04 am

    I have the Bob’s Red Mill Gluten Free Flour blend, can I use that 1:1 as a replacement for almond flour??

    Reply
    • Erin says

      Posted on 2/4 at 8:13 pm

      I haven’t tested it! But it should be ok.

      Reply
  7. Amy says

    Posted on 1/19 at 9:28 pm

    Thanks for the recipe! I made this today with my 8 year old. I made a few without choc chips for my nearly 2 year old. My husband, teenager, the 8 and 2 year olds and I all LOVED them! They’re all gone already! I’m thinking I might make some for my daughter’s upcoming birthday party on the weekend! Do you might if I share your recipe on my blog?

    Reply
    • Erin says

      Posted on 1/20 at 3:21 pm

      OF COURSE!! SO happy you are enjoying them Amy.

      Reply
    • Erin says

      Posted on 8/11 at 8:27 am

      Hi Amy! I am thrilled your whole family loved them so much!! Yes, of course! Thanks for your support!!

      Reply
  8. Kayla says

    Posted on 9/27 at 6:47 am

    These were AMAZING. Wish I could give it 6 stars! Thanks for the recipe. Even my boyfriend who can be picky when it comes to healthy food, absolutely loved it!

    Reply
    • Erin says

      Posted on 9/30 at 11:48 am

      Aw, that is so awesome!! Thanks for sharing Kayla – I love this one as well!

      Reply
  9. Chelsey says

    Posted on 9/26 at 12:24 pm

    I made these muffins using 1 cup almond flour and 1 cup gluten free 1 for 1 flour and they are so good! Such a great recipe! Thanks!

    Reply
    • Erin says

      Posted on 9/30 at 11:47 am

      Oh love to hear that!! Thanks for sharing!

      Reply
    • Lauren says

      Posted on 7/18 at 12:15 pm

      Such a delicious, rich, chocolatey treat! Made them as the recipe stated but used dark chocolate chips because it’s what I had. Semi-sweet chips probably would have made them a little sweeter, but with a nice schmear of peanut butter they are perfectly sweet!

      Reply
      • Erin says

        Posted on 8/2 at 8:16 pm

        Hi Lauren! Thanks for the kind words and glad you liked the muffins and made them your own! Yes, semi-sweet chips are a little less bitter but love you added peanut butter!! 🙂

  10. Susie says

    Posted on 9/19 at 9:09 am

    Seriously delicious. I used WW flour because if I use almond flour then the kids cannot take it to school or the gym (snacks must be nut free)
    Maybe give suggestions for using other flours if you don’t use almond flour.
    Love all your recipes. Keep them coming!

    Reply
    • Erin says

      Posted on 9/20 at 9:12 am

      Great idea! Thanks Susie! Glad you enjoyed.

      Reply
  11. Erin says

    Posted on 9/8 at 6:29 pm

    Hey Leslie, unfortunately each recipe that I make I only test exactly how I’ve stated it. I’m sorry you couldn’t get them to rise, but maybe you had too much moisture.

    Reply
  12. Lesli says

    Posted on 9/6 at 3:30 pm

    I used this recipe as a template because we have different food allergies. I used Namaste all purpose gluten free flour instead of the almond flour, duck eggs instead of chicken eggs and cacao butter instead of coconut oil, The batter was soooo thick (I think the flour blend absorbs more liquid) so I ended up using goat milk to thin the batter out so I could add the zucchini. The flavor on these is fantastic and my boys LOVED them! My problem is that I couldn’t get them to rise and stay that way…still learning through trial and error. Any suggestions are welcomed!!
    Thank you for the recipe!

    Reply
  13. Tara Zlotkin says

    Posted on 8/26 at 9:20 am

    delicious. followed recipe exactly but took out of oven 2 mins early

    Reply
    • Erin says

      Posted on 8/26 at 7:53 pm

      So glad you liked them 🙂 Thanks for sharing!

      Reply
  14. Danielle says

    Posted on 8/26 at 7:05 am

    I made these on the weekend and we devoured them. I guess I should have made a double batch. Very moist and chocolatey….despite not adding the chocolate chips.

    Reply
    • Erin says

      Posted on 8/26 at 7:52 pm

      So happy you liked them Danielle! Thanks for sharing 🙂

      Reply
  15. Louise says

    Posted on 8/21 at 12:09 am

    My kids devoured these. Even my little guy who is super picky. Followed recipe exactly as shown.

    Reply
    • Erin says

      Posted on 8/21 at 6:35 pm

      Im so happy to hear that!!!! Thanks for sharing 🙂

      Reply
  16. D.P says

    Posted on 8/19 at 8:48 pm

    Nutrition info available? These are so yummy!

    Reply
    • Erin says

      Posted on 8/23 at 12:55 pm

      I don’t have it for this recipe yet but you can plug into an online calculator!

      Reply
  17. Abby says

    Posted on 8/7 at 3:39 pm

    These were so good! Did half with chocolate chips and half without and birth were great. Only thing I did different was only use 1/4 cup maple syrup, avocado oil instead of coconut, and added about 1/2 teaspoon vanilla. Thanks for the recipe, Erin!!

    Reply
    • Erin says

      Posted on 8/7 at 8:01 pm

      That sounds amazing Abby! Thanks so much for sharing 🙂 Glad you liked them!

      Reply
  18. Katherine says

    Posted on 8/7 at 9:53 am

    What’s a coconut oil alternative?

    Reply
    • Erin says

      Posted on 8/7 at 9:56 am

      Avocado oil or canola oil. You can also try a nut butter but may need a little more.

      Reply
  19. Megan says

    Posted on 8/6 at 8:30 pm

    Should the coconut oil be melted?

    Reply
    • Erin says

      Posted on 8/7 at 9:55 am

      Yes!

      Reply
      • Emma says

        Posted on 11/24 at 1:05 pm

        Can you add this to the recipe? I’m now in trouble shooting mode because it won’t all mix together D:

      • Erin says

        Posted on 11/30 at 12:52 pm

        yes will do!

  20. kristin says

    Posted on 7/23 at 3:30 am

    in place of maple/honney, would coconut sugar be okay?

    Reply
    • Erin says

      Posted on 7/23 at 7:48 pm

      Should be good! I would maybe add a tbsp more oil since that does take away a moisture aspect.

      Reply
      • Anne says

        Posted on 8/13 at 12:54 pm

        I used coconut sugar with no other modifications and it was absolutely delicious!

    • Rose says

      Posted on 8/9 at 1:12 pm

      Can I use xylitol sugar in place of maple syrop

      Reply
      • Erin says

        Posted on 8/11 at 9:14 pm

        You may be able to make that work!

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I’m Erin. Creator of Erin Lives Whole, a food blog with delicious and easy healthy recipes that will leave you feeling good. We’ve got everything from wholesome baked goods to comforting savory dishes. I can’t wait to see what you whip up! Read More...

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