• Skip to primary navigation
  • Skip to main content
  • Skip to primary sidebar
freebie! download my top 8 dessert recipe ebook

Join my newsletter for latest recipes!

Erin Lives Whole

Healthy Eats + Delicious Treats

  • Recipe Index
    • Course
      • Appetizers
      • Breakfast
      • Lunch & Dinner
      • Dessert
      • Soup
      • Sides
      • Drinks
      • Snacks
      • Sauces & Dips
    • Dessert Type
      • Bars & Balls
      • Breads & Muffins
      • Brownies
      • Cakes
      • Candy
      • Cookies
      • Frozen
      • Pie & Cobbler
      • Other
    • Diet
      • Dairy-Free
      • Gluten-Free
      • Nut-Free
      • Paleo Friendly
      • Vegan
      • Vegetarian
    • Method
      • 30 Minute or Less
      • Air Fryer
      • Grill
      • Instant Pot
      • Meal Prep
      • No Bake
      • One Pot/Pan
      • Oven
      • Stove Top
    • Season
      • Fall
      • Holiday
      • Winter
      • Spring
      • Summer
    • Recipe Filter
    • All Recipes
  • Ebooks
  • Shop
  • Lifestyle
  • About
    • Work With Me
    • Contact
  • Subscribe to receive latest recipes

    Join my newsletter for latest recipes!

  • Browse by Diet
    • Gluten-Free
    • Dairy-Free
    • Nut-Free
    • Paleo Friendly
    • Vegan
    • Vegetarian
  • Breakfast
  • Lunch & Dinner
  • Drinks
  • Snacks
  • Dessert
  • Appetizers
Home Recipes By Meal Breakfast

Healthy Chocolate Zucchini Muffins

87 Reviews Recipe
gf df p
By: Erin Antoniak • Updated On January 29, 2023

This post may contain affiliate links. Please read my disclosure policy.

An easy and healthy recipe for gluten free chocolate zucchini muffins, made with low carb ingredients like almond flour. These double chocolate muffins are moist, fluffy, and perfect for kids and adults alike!

chocolate zucchini muffin

Delicious double chocolate zucchini muffins

These gluten free chocolate zucchini muffins may just be my new favorite breakfast ever. First off, who doesn’t want to eat chocolate for breakfast? Second off, they are loaded with healthy and wholesome ingredients like almond flour, maple syrup, and zucchini.

That’s right, we’re sneaking in some veggies! But, don’t worry. These muffins don’t taste healthy at all. The veggies actually add to the texture by providing a moist, fluffy consistency that makes them that much better.

I love baking with zucchini and have to share my Zucchini Protein Baked Oats too. They are a must bake.

chocolate muffin with peanut butter and chocolate chips and bite taken out of it

These are one of my favorite treats to make ahead of time for breakfast whenever I have a busy morning. If you’re whipping up an entire batch and you don’t need them all right away, just pop them in the freezer for later.

When you’re ready to dive in, defrost them on the counter or in the fridge and you’ve got yourself a homemade bakery style muffin in literally no time.

Bonus Tip: I’m known to slather one up with some peanut butter or almond butter, throw some extra chocolate chips on top, and dive in. 10/10 recommend!

Long story short, these treats are pure bliss.

chocolate muffin cut in half with zucchini shreds and chocolate chips

Ingredients used in chocolate chip zucchini muffins

This ingredients list is simple, easy, and filled with things you most likely already have in your pantry. I love when a recipe includes mostly staples, because it means I probably won’t need to make a trip to the grocery store. The simpler, the better!

Almond flour
I use almond flour in these muffins to make them completely gluten-free and low-carb. This ingredient doubles as my favorite healthy swap because it’s more nutrient-rich than other flours and helps to create moist and fluffy baked goods!

Cocoa powder
I like to use a dark or Dutch processed cocoa powder. In fact, my favorite type is the Whole Foods 365 brand because it provides the perfect amount of chocolate flavor! I often use this ingredient in my chocolate baked goods.

Coconut oil
Coconut oil is my go-to oil because it’s a great alternative to canola or vegetable oil. If you don’t like the flavor of coconut, use a refined option. The refined versions don’t come with a nutty taste, which is why I use that type in most of my recipes.

Maple syrup
By far my favorite non-refined, all-natural sweetener! I love to use this ingredient because it provides the perfect amount of sweet flavor.

Eggs
For this recipe, eggs help to create the correct consistency and contribute to the fluffy texture.

Zucchini
Feel free to keep the skin on your zucchini when shredding it. You can go for a fine shred by using a food processor, or skip that step if you prefer bigger zucchini chunks. I also like to lightly squeeze mine after shredding to discard the extra moisture.

Chocolate chips
The chocolate chips make this recipe complete! I use the dairy free type from Enjoy Life, but you can use whichever brand you prefer.

Tools needed to make this recipe

As far as kitchen items are concerned, you’ll need the following:

  • Muffin tin
  • Muffin liners
  • Non-stick cooking spray
  • Small mixing bowl
  • Large mixing bowl
  • Stirring utensil
  • Spoon
  • Optional: Food processor
  • Measurements: 1/4 tsp, 1/2 tsp, 1 tsp, 1/4 cup, 1/3 cup, 1 cup
chocolate muffin top

How to make healthy chocolate zucchini muffins

If you’ve ever made muffins before, you probably know that it’s not too complicated. Simply mix the ingredients together, spoon the batter into muffin liners, and bake! This recipe should take about a half an hour from start to finish.

To make healthy chocolate zucchini muffins, start by preheating the oven to 350F and lining a muffin tin with cupcake liners. I like to spray the liners with non-stick to be extra careful and ensure that not a single crumb will get left behind.

In a small bowl, whisk the almond flour, cocoa powder, baking soda, and salt together. Set it aside.

Then, in a large bowl, whisk the eggs. Add the coconut oil and maple syrup, and then stir until everything is well combined.

Add the dry ingredients to the wet, and mix everything together.

Fold in the zucchini, followed by half of the chocolate chips.

Scoop the batter into the muffin tins, filling each one 3/4 of the way. Top the batter with the remaining half of the chocolate chips for a delicious chocolatey top layer.

Bake for 19-21 minutes, or until a toothpick inserted in the middle comes out clean.

Enjoy!

Missing an ingredient? Try this!

If you find yourself an ingredient or two short, you may be able to get away with using an easy swap. Here are some common replacements for the coconut oil, maple syrup, eggs, and chocolate chips!

  • Coconut oil: Canola, vegetable, or any similar high-fat oil will work to replace coconut oil. Use a 1:1 ratio.
  • Maple syrup: You can use molasses or honey in place of maple syrup. Start with a small amount and add more to taste.
  • Chocolate chips: Don’t have any chocolate chips on hand? Simply leave them out! A second option is to use any candy or chocolate that you have on deck by chopping it up into small chunks.
muffin with peanut butter

More muffin ideas from Erin Lives Whole

In the mood for some more muffin ideas? You’ll want to try these! Each recipe is made with simple, easy ingredients.

  • Sweet Potato Muffins
  • Paleo Pumpkin Muffins
  • Lemon Poppy Seed Muffins
  • Strawberry Banana Muffins
  • Lemon Blueberry Muffins
chocolate zucchini muffins
chocolate zucchini muffins
5 Stars 4 Stars 3 Stars 2 Stars 1 Star 4.9 from 87 reviews

Gluten Free Chocolate Zucchini Muffins

An easy and healthy recipe for gluten free chocolate zucchini muffins, made with low carb ingredients like almond flour. These double chocolate muffins are moist, fluffy, and perfect for kids and adults alike!

Prep: 10 Cook: 20 Total: 30 minutes
Yield 12 muffins 1x
Scale
Print Pin it Rate

Ingredients

  • 2 cups almond flour
  • 1/3 cup cocoa powder
  • 1/2 tsp baking soda
  • 1/4 tsp salt
  • 3 eggs
  • 1/4 cup coconut oil – melted
  • 1/3 cup maple syrup
  • 1 tsp vanilla
  • 1 cup finely shredded zucchini, then squeezed in paper towel to release extra moisture.
  • 1 cup chocolate chips

Instructions

  1. Preheat oven to 350F and line muffin tin with cupcake liners or non stick spray.
  2. In a small bowl, whisk together almond flour, cocoa powder, baking soda, and salt. Set aside.
  3. In a large bowl, whisk eggs. Add in coconut oil,  maple syrup, and vanilla, and stir till well combined.
  4. Add dry ingredients to wet ingredients.
  5. Fold in zucchini, and then half of the chocolate chips.
  6. Scoop in muffin tin until 3/4 full, topping with remaining half of chocolate chips.
  7. Bake for 19-21 minutes or until toothpick inserted in middle comes out clean.
  8. Enjoy!
Author: Erin Antoniak Category: gluten-free, dessert, breakfast, snack, paleo
chocolate zucchini muffins

Did you make this?

Leave a comment below and tag @erinliveswhole on social media!

erinliveswhole

There may be affiliate links in this post! By purchasing a product I recommend, I may receive a small compensation. However, I only recommend products I absolutely love and use myself. Thank you for supporting Erin Lives Whole, it helps keep this blog afloat 🙂

You May Also Like...

  • stack of zucchini muffins
    Healthy Zucchini Muffins
  • half of pumpkin muffin
    The Best Healthy Pumpkin Muffins
  • paleo lemon blueberry muffins
    Paleo Lemon Blueberry Muffins
  • stack of zucchini muffins
    Healthy Zucchini Muffins
Previous Post
Next Post

Reader Interactions

Leave a Comment Cancel reply

Have a question? Use the form below to submit your question or comment. I love seeing what you made!

Recipe rating 5 Stars 4 Stars 3 Stars 2 Stars 1 Star
Recipe Rating




  1. Lisa Fowlkes says

    Posted on 8/22 at 5:43 pm

    So nasty!!! Not sweet enough and the texture of isterrible! Extremely bland.

    Reply
    • Erin says

      Posted on 8/26 at 4:18 pm

      Hi Lisa, sorry to hear that you didn’t like the muffins! These are one of our favorites.

      Reply
  2. Ramae Hamrin says

    Posted on 8/20 at 3:07 pm

    These were delicious. Absolutely perfect. Used half the chocolate chips; otherwise followed the recipe exactly. Went so well with a cup of strong coffee. Everyone who tried them loved them. Will definitely be making these again!

    Reply
    • Erin says

      Posted on 8/21 at 8:00 am

      Hi Ramae, thanks for your kind words! I am so happy everyone enjoyed them! 🙂

      Reply
  3. VC says

    Posted on 8/13 at 5:05 pm

    Highly recommend! I added walnuts and toasted coconut to it. Amazing!

    Reply
    • Erin says

      Posted on 8/14 at 11:45 am

      Hi! Thank you so much for your kind words! So happy you love them and great additions! 🙂

      Reply
  4. Lynne says

    Posted on 8/5 at 8:23 am

    My muffins were very dense. I used all purpose flour in replace of almond flower. Did that change the consistency?

    Reply
    • Erin says

      Posted on 8/5 at 1:38 pm

      Hi Lynne, generally almond and all purpose flour have a 1:1 ratio, so as long as you used 2 cups, it should have been okay. It could have been due to over mixing. Also, did you follow the rest of the recipe exactly?

      Reply
  5. Sabine Stadelman says

    Posted on 7/21 at 10:24 pm

    This recipe is fantastic. I’m transitioning into baking with things like almond/coconut flour, coconut sugar and wasn’t sure if i’d notice a difference in texture in these as I normally use all purpose (mostly for my fam than me). But these are honestly amazing, my sister said they taste like chocolate cupcakes. No one would guess theres zucchini in them let alone the lack of processed sugar. I was blown away! Keep doing you Erin, your recipes rock!

    Reply
    • Erin says

      Posted on 8/2 at 7:48 pm

      Hi Sabine! Thank you so much for your kind words and so happy to hear you’re experimenting with new ingredients. It means a lot that my recipes are part of it! Thanks so much! 🙂

      Reply
  6. Steph says

    Posted on 7/17 at 9:25 am

    These are SO GOOD! Super moist, and not overly sweet. Easy to make. Definitely 5 stars.

    Reply
    • Erin says

      Posted on 8/2 at 9:29 pm

      Hi Steph, I’m so happy you like the muffins!! Thanks for the kind words!

      Reply
  7. Smith says

    Posted on 7/17 at 8:27 am

    One of the most delicious desserts I’ve ever eaten. 100% recommend slathering in peanut butter. Do it.

    Reply
    • Erin says

      Posted on 8/2 at 9:29 pm

      Hi Smith, I am so glad you love the muffins and yes, peanut butter is the best! 🙂

      Reply
  8. Lydia says

    Posted on 7/15 at 10:33 am

    I substituted oat flour 1:1 in place of the almond flour and they turned out great!

    Reply
    • Erin says

      Posted on 8/2 at 10:08 pm

      Hi Lydia, so happy you loved the muffins and made them your own! 🙂

      Reply
  9. PAGrammy says

    Posted on 7/11 at 10:58 am

    I have celiac disease so I’m always looking for good GF recipes.
    This exceeds my expectations. They are delicious and easy to make with ingredients I already have in my pantry.

    Reply
    • Erin says

      Posted on 8/2 at 10:48 pm

      Hi PAGrammy, I’m so happy to hear you enjoyed the muffins!!

      Reply
  10. fatima says

    Posted on 7/11 at 12:53 am

    I divided the recipe in half and didn’t feel like halving an egg and they turned out fine. I also added a spoon of tahini to make up for the 1/2 egg. The texture of these was SO good, and the flavor was almost perfect, except we thought they could be a bit sweeter!

    Reply
    • Erin says

      Posted on 8/2 at 10:48 pm

      Hi Fatima, I’m so glad you enjoyed the muffins and made them your own!

      Reply
  11. Brittany says

    Posted on 7/10 at 5:04 pm

    These muffins are so good! I probably need to start saying that they are my favorite food, I love them that much! Over the last year I have made them at least once a week because they are the perfect snack, breakfast, addition to lunch … again probably my favorite food. Even my father in law who is very anti-squash of any kind is a fan! My MIL couldn’t believe I snuck in zucchini and he ate them even requesting I make them for him again. So good!

    Reply
    • Erin says

      Posted on 8/2 at 10:57 pm

      Hi Brittany, thank you so much for your kind words! I’m so happy they’ve become your favorite and your family enjoys them too! 🙂

      Reply
  12. Meghan says

    Posted on 7/8 at 3:25 pm

    How long would you recommend cooking if I wanted to turn this into a loaf? Looks delicious!

    Reply
    • Erin says

      Posted on 8/3 at 9:18 pm

      Hi Meghan, I would try adding 5-10 minutes to the final cook time! Keep testing with a toothpick and when it comes out clean it is ready! Let me know how it goes!!

      Reply
  13. Kathleen Shaw says

    Posted on 6/24 at 9:56 pm

    Absolutely delicious! I made these for my family and they loved them. My 5 and 7 year old are super picky but they ate these. Making them again tonight. Thanks for the alternatives to some items also. I used two different oils and both turned out great!

    Reply
    • Erin says

      Posted on 8/3 at 9:35 pm

      Hi Kathleen, thanks for the kind words. So happy your kids like them too! 🙂

      Reply
  14. Genna Yuasa-Acosta says

    Posted on 6/17 at 11:17 pm

    Can I use stevia with cane sugar, and if so how much please?

    Reply
    • Erin says

      Posted on 8/4 at 8:13 pm

      Hi Genna, unfortunately, I have not tried this substitute myself yet. If you try it, please let me know how they come out!

      Reply
  15. Serena says

    Posted on 6/15 at 3:22 pm

    These are the besttttttt
    Such a filling/no guilt snack.
    My toddler loves all your recipes and this is no exeption!

    xox

    Reply
    • Erin says

      Posted on 8/3 at 10:59 pm

      Hi Serena, thank you soo much for the kind words! So happy you both love them! 🙂

      Reply
  16. Cara Lockrem says

    Posted on 5/6 at 10:50 am

    I’ve made this twice, each time I used olive oil as I dislike coconut oil and don’t have the other oils mentioned. Turns out excellent. Olive oil lends a lovely taste to chocolate, in my opinion. I also added some espresso powder and walnuts. OMG, so good! Thanks for a great recipe!

    Reply
    • Erin says

      Posted on 8/4 at 11:21 pm

      Hi Cara, I am so happy you made it your own and enjoy the muffins!!

      Reply
  17. katash says

    Posted on 4/26 at 11:48 pm

    We’ve made these twice so far and they are now our go-to muffins. Moist, not soggy, not too sweet… Thanks for the recipe!

    Reply
    • Erin says

      Posted on 8/5 at 12:34 am

      Hi Katash, thank you so much for your kind words! I am so happy you enjoyed them! 🙂

      Reply
  18. Leslie Gotfrit says

    Posted on 4/7 at 1:35 pm

    These are delicious, with a perfect texture, and they don’t taste gluten free. I did sub out 1/3 of the almond flour with a mix of gf grains–teff, millet, amaranth, quinoa flour, a small amount of brown rice flour–because all almond flour can be heavy. Otherwise, exactly as printed. Greased the tin with melted coconut oil and they popped right out. Great recipe–thanks!

    Reply
    • Erin says

      Posted on 8/5 at 10:16 pm

      Hi Leslie, thanks for the kind words! I am so glad they came out well and you made it your own!

      Reply
  19. Leah D says

    Posted on 3/30 at 9:52 am

    Can’t get enough of these! Seriously… my partner asks to make them on a weekly basis. I have him shred the zucc 😉

    Reply
    • Erin says

      Posted on 8/6 at 9:24 pm

      Hi Leah! I am so happy you both enjoyed them!

      Reply
  20. Lily says

    Posted on 3/27 at 9:45 pm

    I used dark chocolate and muffins were really good, not too sweet. And my kid loved light taste of coconut in it. Love the recipe. Thank you!

    Reply
    • Erin says

      Posted on 8/6 at 10:22 pm

      Hi Lily, thank you so much for your kind words! I am so happy you enjoyed them and made them your own! 🙂

      Reply
    • Erin says

      Posted on 8/6 at 10:32 pm

      Hi Lily! I am so happy you both enjoyed them!!

      Reply
Older Comments
Newer Comments

Primary Sidebar

erin in front of a building

Hey there!

I’m Erin. Creator of Erin Lives Whole, a food blog with delicious and easy healthy recipes that will leave you feeling good. We’ve got everything from wholesome baked goods to comforting savory dishes. I can’t wait to see what you whip up! Read More...

grocery lists

Shop My Grocery Downloads

Do you head to the grocery store and feel overwhelmed with all of the options? Well, I've created FIVE downloadable and printable grocery lists from five different and popular grocery stores. All of my absolute must haves from Whole Foods, Target, a regular grocer, Trader Joe's, and Costco!

Shop Now

Popular Posts

chickpea brownie on a tray

Chickpea Brownies

bite out of healthy cookie dough ball

Healthy Cookie Dough Balls

cauliflower wings on plate

Buffalo Cauliflower Wings

pouring syrup on stack of oatmeal blender pancakes

Oatmeal Blender Pancakes

Trending Recipes

avocado corn salad

Summer Avocado Corn Salad

cilantro lime shrimp on plate

Cilantro Lime Shrimp with Coconut Cauliflower Rice

paleo cookie skillet with ice cream

Healthy Cookie Skillet

banana bread muffin on a rack

Paleo Banana Bread Muffins

Featured On

good housekeeping logo
parade logo
feed feed logo
business insider logo
everyday health logo
country living logo
bar desserts
truffles
bar desserts
bar desserts
muffins
vanilla birthday cake with chocolate icing

Get latest updates To your inbox!

Back to Top
© 2026 Erin Lives Whole
  • Privacy Policy
Site Credits Designed by Melissa Rose Design Developed by Once Coupled
paleo chocolate zucchini muffin