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Home Recipes By Meal Dessert

Healthy Mini Apple Pies

14 Reviews Recipe
gf df
By: Erin Antoniak • Updated On February 16, 2023

This post may contain affiliate links. Please read my disclosure policy.

This healthy mini apple pies recipe is a deliciously easy dessert made with a homemade cookie crust. These mini pies are made with almond flour, making them both gluten-free and low carb!

healthy mini apple pie on plate

When I started to think about fall recipes and what I was going to make this year, I knew one thing had to be on my list. Enter, healthy mini apple pies.

I grew up in a house where apple pie was taken very seriously, where crust was made from Crisco and white flour, where the filling was laden with white sugar and butter.

No one in the world could beat my grandmother’s recipe for her apple pie. It was and always will be the best apple pie I’ve ever tasted!

But in an effort to try to recreate that flaky crust and that warm fresh apple cinnamon-y inside in a slightly healthier way, I decided to tackle it in a miniature version first.

So with that being said, I created these healthy mini apple pies with a completely gluten free and dairy free crust, no refined sugar (only natural sugar, please!), and in a pop-able size, which makes them perfect for snacking or sharing with a group!

I love making mini desserts to have a small bite of something sweet and wanted to share my Healthy Mini Cheesecake Recipe and Mini Pecan Pies too.

mini apple pies on rack

Ingredients in apple pie bites

Homemade apple pie should be made with easy ingredients that you most likely already have in your house! These little bites only have a short list of ingredients but pack a mighty delicious flavor.

Apple pie crust ingredients

There are only a few simple ingredients in our apple pie crusts. The crust closely resembles a cookie, almost like a sugar cookie!

  • almond flour
  • baking soda
  • cinnamon
  • salt
  • egg
  • honey
  • oil

Apple pie filling ingredients

Homemade apple pie filling is made with fresh apples, fall spices, and a little bit of natural sugar and butter!

  • apples (we used honeycrisp!)
  • butter (or coconut oil/vegan butter!)
  • coconut sugar
  • spices
mini apple pies

How to make healthy mini apple pie bites

Traditional apple pie can take a long time to make, and sometimes we just don’t have time for that. Trust me when I saw these individual apple pies only take minutes to make.

First step is to make your crust. This crust isn’t one of those super intimidating ones where you need to use a pastry cutter. In fact, all you have to do is mix together your almond flour, baking powder, cinnamon, and salt with a spoon.

Then in a separate smaller bowl, combine the egg, honey, and oil. Add these wet ingredients to almond flour mixture and stir till combined. Let dough rest for 5 minutes.

Next up, press 1-2 tablespoons of dough into your mini muffin tin being sure you create a large dent in the middle for where the apples will go.

Bake them until golden brown and let cool completely while you make your apple pie filling.

While crusts are cooling, heat a small saucepan with 1 tbsp butter. Stir in apples, coconut sugar, and spice. Let cook for 4-5 minutes or until just softened.

Divide among crust cups. Top with whipped cream or enjoy as is!

healthy mini apple pie

How to store mini apple pies

We highly recommend making them and serving right away, however they can be left in the fridge for up to three days. Just be warned that they will soften!

I’m so excited to see how many of you make these little apple pies and hope you enjoy them as we dive into the cooler temperatures!

And oh, top them with ice cream or coconut whipped cream like I did here!

If you liked this recipe, you’ll want to try these!

  • Healthy Apple Crumble Pie
  • Healthy Apple Cinnamon Muffins
  • Paleo Pumpkin Pie

If you make this recipe, be sure to comment below and let me know how it was! Also tag @erinliveswhole on Instagram and use the hashtag #erinliveswhole so I can see it and feature you!

healthy mini apple pies

healthy mini apple pie on plate
5 Stars 4 Stars 3 Stars 2 Stars 1 Star 4.8 from 14 reviews

Healthy Mini Apple Pies

This healthy mini apple pie recipe is a deliciously easy dessert made with a homemade cookie crust. These mini pies are made with almond flour, making them both gluten-free and low carb!

Prep: 15 minutes Cook: 15 minutes Total: 30 minutes
Yield 16–18 mini pies 1x
Scale
Print Pin it Rate

Ingredients

Crust

  • 2 cups almond flour
  • 1 tsp baking powder
  • 1 tsp cinnamon
  • 1/2 tsp salt
  • 1 egg
  • 2 tablespoons honey
  • 2 tablespoons melted coconut oil

Filling

  • 2 medium apples, diced very small – I used Honeycrisp.
  • 1 tbsp butter (or coconut oil)
  • 2 tbsp coconut sugar (or brown)
  • 1 tsp pumpkin pie spice (or mixture of cinnamon, nutmeg, ginger, cloves)

Instructions

  1. Preheat oven to 325F. Prepare mini muffin tin by greasing.
  2. In a large bowl, mix the almond flour, baking powder, cinnamon, and salt with a whisk.
  3. In a small bowl, combine egg, honey, and oil.
  4. Add wet ingredients to almond flour mixture and stir till combined. Let dough rest for 5 minutes.
  5. Press 1-2 Tbsp dough into mini muffin tin being sure you create a large dent in the middle.
  6. Bake for 10-12 minutes or until golden brown. 
  7. Let cool completely before adding apple topping.
  8. While cooling, heat a small saucepan with 1 tbsp butter. Stir in apples, coconut sugar, and spice.
  9. Let cook for 4-5 minutes or until just softened. Remove from heat.
  10. Divide among crust cups.
  11. Top with whipped cream or enjoy as is!
  12. Store in refrigerator if not enjoying immediately.

Notes

Pro tip: use any leftover apple filling on oats!

Author: Erin Antoniak Category: gluten-free, dessert, dairy-free
healthy mini apple pie on plate

Did you make this?

Leave a comment below and tag @erinliveswhole on social media!

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There may be affiliate links in this post! By purchasing a product I recommend, I may receive a small compensation. However, I only recommend products I absolutely love and use myself. Thank you for supporting Erin Lives Whole, it helps keep this blog afloat 🙂

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Recipe Rating




  1. Mia says

    Posted on 10/3 at 10:01 pm

    5/5! These mini apple pies were delicious & curved my sweet tooth perfectly! 🍎🥧 😋 Thank you! Simple and satisfying, my toddler helped and approved as well!

    I had read some other comments saying the dough wasn’t coming out right, so i don’t know if you changed the quantities, but i followed it exactly with the 2 cups of almond flour, 1 egg, etc and the crust came out perfectly for me. It is not too doughy or dry as long as you mix the quantities throughly (i mixed by hand with a spatula).
    I used a regular sized muffin pan (that was buttered & floured for easy lifting the cooked crusts), and i used exactly 1.5 TBS of batter for each crust. I was careful about pressing it down and around the sides, and although some did not reach all the way up the wall, after cooking they came up a bit. My focus was to make sure the crusts were not too thick to be left uncooked, and not too thin where they would fall apart. I also cooked them for 11 min, took them out of the oven but let them cool in the muffin tin (when they were warm, they were more likely to fall apart).

    My batter only made 8 crusts, and i had maybe 2 mini pie apple fillings left over with the quantities listed, but I am not complaining because the crusts held up & were cooked through!

    I also made our whipped cream by just whipping some heavy cream & maple syrup. 😋

    Reply
    • Erin says

      Posted on 10/7 at 3:16 pm

      Hi Mia, so happy you loved them so much and made them your own!!

      Reply
  2. Kaitlynn says

    Posted on 8/13 at 4:35 pm

    Im having a really hard time with this “crust”. I first made them by doing as you said, pushing a dent while its in the mini muffin pan. That didnt work the slightest.. way too thick in some parts and didnt fully cook. Put in the oven for longer and didnt help. Remade them and evenly flattened out the crust dough to try and get them to cook evenly, same thing happened. I followed the recipe to a T and I can’t get it right. I bake all the time, so im not sure what’s going on.

    Reply
  3. patricia a powers says

    Posted on 11/16 at 2:39 pm

    Instead of mini muffin pan could I use this in a pie dish?

    Reply
  4. Caitlyn says

    Posted on 10/8 at 4:58 pm

    I think the measurement sizes are wrong, 2 cups of the flour with wet ingredients does not make a dough, am I doing something wrong? I had to combine 3x wet ingredients to make it work… not sure what is going on

    Reply
    • Megan says

      Posted on 8/30 at 11:19 am

      Agree! The first batch of crusts I made were just powder. Next batch, I doubled the wet ingredients and that seemed to hold better. But the filling was 😘 both times!

      Reply
  5. Bonnie from Spanaway WA says

    Posted on 5/27 at 6:19 pm

    Your photo looks like cupcake size, not mini’s. Apples are not small diced as recipe calls for. My crusts puffed up during baking, and wouldn’t stay dented in when doing again during cooling. Crust rather flavorless; definitely dry. Filling…”medium” size Honeycrisp’s don’t exist; they are all on steroids size-wise. I feel a sweeter, softer apple would work better for minis. Used plant-based GF/DF buttery spread for flavor over coconut oil. Used brown sugar over coconut sugar as the latter has added sugars. Used 2 t cinnamon & 1/8 t nutmeg instead of Pumpkin Pie Spice. Filling made ~7/8 c extra. Haven’t made coconut whipped topping yet as I forgot to chill overnight. Will have to use Thai brand as that’s all the stores carry. What is the “needed” fat content for it to work?

    Reply
  6. Dianna says

    Posted on 11/22 at 8:48 pm

    If I don’t have coconut oil can I substitute vegetable oil or vegan butter in the crust?

    Reply
    • Erin says

      Posted on 11/23 at 12:34 pm

      Hi Dianna, yep that should be okay! Let me know how they come out!

      Reply
  7. Cynthia says

    Posted on 11/4 at 11:19 pm

    Could you use regular muffin tins? And if so does the baking time differ , and can’t you make lattic crust on top.

    Reply
    • Erin says

      Posted on 11/7 at 12:16 pm

      Hi Cynthia, you can use regular muffin tin and cook time should be the same. Let me know how they come out!!

      Reply
  8. Zina says

    Posted on 7/27 at 8:46 pm

    I don’t usually make gluten free desserts but wow! this is a keeper. They turned out beautifully and taste great. Thanks for the recipe.

    Reply
    • Erin says

      Posted on 7/29 at 3:29 pm

      Hi Zina, so happy you loved them!! 🙂

      Reply
  9. Nassera says

    Posted on 5/1 at 12:09 pm

    Hello

    May i ask why for this dough you used baking powder and for the mini pecan pies, you used baking soda
    I accidently used baking powder for the pecan…
    What is the difference ?

    Thank you for sharing your recipes

    Kind regards
    Nassera from the Netherlands

    Reply
  10. Kate says

    Posted on 11/26 at 6:00 pm

    So cute and so yummy! My family couldn’t believe that they were homemade

    Reply
    • Erin says

      Posted on 11/28 at 1:48 pm

      Hi Kate, so happy they were such a hit!!

      Reply
  11. Marguerite Jones says

    Posted on 10/9 at 2:35 pm

    Made these for oma who has celiac omgosh….so delicious.

    Reply
    • Erin says

      Posted on 10/11 at 1:11 pm

      Hi Marguerite, so glad you made them your own and oved the pies!!

      Reply
  12. Rachel says

    Posted on 3/12 at 9:00 am

    Wow!!! They came out delicious. So easy to make. I used frozen mango and 1 apple. Amazing!

    Reply
    • Erin says

      Posted on 3/12 at 7:42 pm

      Hi Rachel, so glad you enjoyed them and great combo!!

      Reply
  13. Van says

    Posted on 1/11 at 1:50 am

    Can I use sugar free maple syrup instead of sugar?

    Reply
    • Erin says

      Posted on 1/15 at 12:13 am

      Hi Van, yes that’ll work! Let me know how your pies come out!

      Reply
  14. Jenny Hsu says

    Posted on 1/3 at 5:41 pm

    You won’t feel guilty eating a bunch of these. Such a treat, and even better with a scoop of vanilla ice cream. I used Fuji apples and they came out great!

    Reply
    • Erin says

      Posted on 1/4 at 3:05 pm

      Hi Jenny, thanks for sharing and love adding ice cream!

      Reply
  15. Laura says

    Posted on 12/31 at 4:44 pm

    I thought they would take longer to make. They didn’t. They taste great but you really need the whip cream or ice cream as a finishing touch. Thanks for the recipe.

    Reply
    • Erin says

      Posted on 1/4 at 12:58 pm

      Hi Laura, I am so glad you enjoyed them!!

      Reply
  16. Alexis says

    Posted on 11/25 at 9:42 pm

    I love all your recipes but this one takes the cake!

    Reply
    • Erin says

      Posted on 11/25 at 10:34 pm

      Hi Alexis, thank you so much for your kind words! I am thrilled you loved them!

      Reply
  17. Roopa says

    Posted on 11/24 at 9:56 am

    Hey,
    How can I recipe egg in the recipe. Iam a vegan. Nice recipe
    Thanks
    Roopa

    Reply
    • Erin says

      Posted on 11/24 at 10:36 am

      Hi Roopa, you could use a flax egg or try applesauce. Let me know how your pies come out!

      Reply
  18. Lynda says

    Posted on 11/15 at 2:10 pm

    Can these be frozen for a period of time?

    Reply
    • Erin says

      Posted on 11/18 at 8:35 pm

      Hi Lynda, yes that should be fine!

      Reply
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I’m Erin. Creator of Erin Lives Whole, a food blog with delicious and easy healthy recipes that will leave you feeling good. We’ve got everything from wholesome baked goods to comforting savory dishes. I can’t wait to see what you whip up! Read More...

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