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Healthy Mini Cheesecake Recipe

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By: Erin Antoniak • Updated On May 1, 2026
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Indulge in delicious flavor with this Healthy Mini Cheesecake Recipe. These personal-sized desserts are made with delicious ingredients like graham crackers, cream cheese, and blueberries!

mini cheesecakes with blueberries

The perfect mini cheesecakes

With healthy mini cheesecakes, there’s no fighting over who gets the bigger piece, because everyone gets their own! These individual personal-sized cheesecakes are the perfect dessert for a crowd or brunch situation, but they’re equally as good when you just want something sweet and savory.

We’ll be creating the perfect graham cracker base followed by a filling of cream cheese, Greek yogurt, and honey. I love to complete them with the addition of blueberries, and that’s what I recommend using in this recipe! Sweet, delicious, and absolute perfection!

mini cheesecakes with blueberries

Ingredients in healthy mini cheesecakes

This healthy cheesecake recipe will begin with a butter and graham cracker combo crust. Then, we’ll get into the filling. You need only 8 ingredients total!

Crust

  • Graham crackers: Start with 10 graham crackers. We’ll use these to create the base of the cheesecakes!
  • Butter: Prepare 6 tbsp of melted butter for mixing in with the crackers.

Cheesecake Filling

  • Cream cheese: 1 block of cream cheese will be the first ingredient in the cheesecake filling. I recommend a 1/3 less fat brand. My go-to is Neufchatel!
  • Greek yogurt: The cream cheese will be mixed with 1/2 cup of Greek yogurt. This is a great way to cut down on the cream cheese and add extra protein!
  • Honey: Sweeten things up by adding 1/4 cup of honey.
  • Egg: 1 egg brings the filling ingredients together.
  • Vanilla: Add 2 tsp of vanilla for extra flavor!
  • Salt: Last but not least, a pinch of salt adds the perfect final touch.

For an optional topping, warm some blueberries in the microwave and then place them on top of the cheesecakes!

graham cracker crust

Tools needed to make this recipe

To create Greek yogurt cheesecakes, start with a muffin tin, nonstick spray or muffin liners, food processor, and spatula. For measuring you will need 1 tsp, 1 tbsp, 1/4 cup, and 1/2 cup.

How to make this healthy mini cheesecake recipe

Myth: Cheesecake is hard to make. Fact: Cheesecake is just as easy to create as cake or brownies!

To begin, preheat the oven to 350ºF and grease or line a muffin tin.

In a food processor, blend the graham crackers and butter until combined. Alternatively, crush the graham crackers into fine crumbs using something heavy.

Divide the crumbs evenly amongst the muffin tins and press them down, flattening and packing them into the tins.

Bake for 6 minutes.

While the graham crackers bake, clean the food processor and then add all of the ingredients for the cheesecake filling.

Blend the ingredients until the mix is completely smooth.

Divide the filling evenly amongst the muffin tin and bake for 17-20 minutes, or until they look set and do not jiggle.

Let cool for 15 minutes before refrigerating for at least 2 hours.

Top with warmed blueberries if desired.

Step-by-step Instructions on how to make Mini Cheesecakes

making mini cheesecake

Additional topping options

For some alternate toppings, try using strawberries (warm them for extra deliciousness), chocolate shavings, or even a peanut butter drizzle. You can also use jam or compote, chocolate syrup, or crushed cookie pieces! Sometimes I like to place some crushed graham cracker pieces on top as well.

How this cheesecake is healthier

These mini cheesecakes are made healthier with two key ingredients: 1/3 less fat cream cheese and Greek yogurt! By using these in place of full-fat cream cheese, we create a lower calorie, healthier cheesecake dessert.

mini cheesecakes with blueberries

If you liked this recipe, you’ll want to try these!

Berry (and cherry) treats don’t end here. Try these delicious desserts that serve as yummy treats any time of year!

  • Healthy Blueberry Cobbler
  • Berry Crumble Bars (Gluten-free, dairy-free, vegan)
  • Healthy Strawberry Crisp (Gluten-free, vegan)
  • Healthy Cherry Pie Oatmeal Bars

Photos by Moriah Sawtelle and recipe by Erin Antoniak.

If you tried this recipe or any other recipes on my blog, please leave a 🌟 star rating and let me know how it went in the 📝 comments below. Follow @erinliveswhole on Instagram and tag me in any of the recipes you make so I can repost them!

mini cheesecakes with blueberries
Erin Antoniak

Healthy Mini Cheesecake Recipe

5 from 10 votes
Indulge in delicious flavor with this Healthy Mini Cheesecake Recipe. These personal-sized desserts are made with delicious ingredients like graham crackers, cream cheese, and blueberries!
Print Recipe Pin Recipe
Prep Time 20 minutes mins
Cook Time 20 minutes mins
Total Time 40 minutes mins
Servings: 12 cheesecakes
Course: cheesecake, Dessert, gluten-free, mini, nut-free
Cuisine: American
Calories: 134
Ingredients Method Nutrition Notes

Ingredients
  

Crust
  • 10 graham crackers
  • 6 tbsp melted butter
Cheesecake Filling
  • 1 block neufchatel or 1/3 less fat cream cheese
  • 1/2 cup plain Greek yogurt
  • 1/4 cup honey
  • 1 egg
  • 2 tsp vanilla
  • pinch of salt
  • Optional topping: warm blueberries in microwave.

Method
 

  1. Preheat oven to 350F and grease or line a muffin tin
  2. In a food processor, blend together graham crackers and butter. Alternatively, crush into very fine crumbs using something heavy.
  3. Divide crumbs evenly amongst muffin tin and press down to flatten and pack using fingers.
  4. Bake for 6 minutes.
  5. While baking, clean food processor and then add all ingredients for cheesecake filling to clean food processor.
  6. Blend until completely smooth.
  7. Divide evenly amongst muffin tin and bake for 17-20 minutes or until they look set and do not jiggle.
  8. Let cool 15 minutes before refrigerating for at least 2 hours.
  9. Top with warmed blueberries if desired.

Nutrition

Calories: 134kcalCarbohydrates: 15gProtein: 2gFat: 7gSaturated Fat: 4gPolyunsaturated Fat: 0.3gMonounsaturated Fat: 2gTrans Fat: 0.2gCholesterol: 29mgSodium: 131mgPotassium: 44mgFiber: 0.4gSugar: 9gVitamin A: 196IUVitamin C: 0.03mgCalcium: 23mgIron: 1mg

Notes

  • Make sure the cream cheese is at room temperature before blending. Cold cream cheese won’t blend smoothly and will leave lumps.
  • Bake the graham cracker crust before adding the filling. This is the key to preventing a soggy base.
  • Refrigerate for at least 2 hours after they’ve cooled for 15 minutes. They need the full chill time to set up properly before you dig in.

Tried this recipe?

Let us know how it was!

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5 from 10 votes

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Have a question? Use the form below to submit your question or comment. I love seeing what you made!

Recipe Rating




  1. Michelle Barnett says

    Posted on 12/31 at 4:34 pm

    I would prefer to use the Simply Mills brand graham crackers. Do you have a precise measurement for the graham crackers?

    Reply
  2. Rachel says

    Posted on 7/21 at 1:36 pm

    Hi! When you say 10 graham crackers, do you mean 10 graham cracker sheets or 5 graham cracker sheets (with 2 graham crackers per sheet)?

    Reply
    • Erin says

      Posted on 7/22 at 10:48 am

      Hi Rachel, graham cracker sheets! Let me know how your cheesecakes come out! 🙂

      Reply
  3. Dea Brayden says

    Posted on 5/26 at 8:14 pm

    5 stars
    Delicious! I used cinnamon graham crackers and added in a couple more because they seemed a little thinner. Made a double batch, topped with strawberries (lightly sugared) and blueberries. And poof! All gone. Thanks for this recipe!

    Reply
    • Erin says

      Posted on 5/27 at 3:10 pm

      Hi Dea, so happy you loved them!!

      Reply
  4. R says

    Posted on 5/1 at 2:41 am

    how many oz. in a “block” of cheese?

    Reply
    • Erin says

      Posted on 5/1 at 7:05 pm

      Hi, it should be 8oz. Let me know how yours come out!

      Reply
  5. Julia says

    Posted on 6/23 at 9:43 pm

    Hi,
    Would this work with maple syrup instead of honey? I prefer the flavor of maple syrup.
    Thank you!!

    Reply
    • Erin says

      Posted on 6/27 at 9:21 pm

      Hi Julia, yes, that should work! Let me know how yours come out!

      Reply
  6. Sarah says

    Posted on 3/9 at 2:23 pm

    Do you need to have the cream cheese at room temperature? Thank you!

    Reply
    • Erin says

      Posted on 3/13 at 6:57 pm

      Hi Sarah, yes! Let me know how they come out for you!!

      Reply
  7. Abby says

    Posted on 3/3 at 10:46 am

    5 stars
    These are so easy and so good! A perfect after dinner treat!

    Reply
    • Erin says

      Posted on 3/10 at 7:35 am

      Hi Abby, so happy you loved them! 🙂

      Reply
  8. Vanessa says

    Posted on 2/11 at 9:46 pm

    How many calories in each one?

    Reply
    • Erin says

      Posted on 2/12 at 6:33 pm

      Hi Vanessa, each has 245 calories as seen in the nutrition facts under the recipe card.

      Reply
  9. Ivette says

    Posted on 1/28 at 12:47 pm

    5 stars
    My favorite go to dessert!

    Reply
    • Erin says

      Posted on 1/29 at 3:20 pm

      Hi Ivette, so glad you loved them!! 🙂

      Reply
  10. Caryn says

    Posted on 1/21 at 3:30 pm

    Do these cheesecakes freeze well? If yes, a double batch is in order!

    Reply
    • Erin says

      Posted on 1/21 at 3:38 pm

      Hi Caryn, yes! Just keep them in an airtight container in the freezer! Enjoy!!

      Reply
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Healthy Mini Cheesecake Recipe
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