• Skip to primary navigation
  • Skip to main content
  • Skip to primary sidebar
freebie! download my top 8 dessert recipe ebook

Join my newsletter for latest recipes!

Erin Lives Whole

Healthy Eats + Delicious Treats

  • Recipe Index
    • Course
      • Appetizers
      • Breakfast
      • Lunch & Dinner
      • Dessert
      • Soup
      • Sides
      • Drinks
      • Snacks
      • Sauces & Dips
    • Dessert Type
      • Bars & Balls
      • Breads & Muffins
      • Brownies
      • Cakes
      • Candy
      • Cookies
      • Frozen
      • Pie & Cobbler
      • Other
    • Diet
      • Dairy-Free
      • Gluten-Free
      • Nut-Free
      • Paleo Friendly
      • Vegan
      • Vegetarian
    • Method
      • 30 Minute or Less
      • Air Fryer
      • Grill
      • Instant Pot
      • Meal Prep
      • No Bake
      • One Pot/Pan
      • Oven
      • Stove Top
    • Season
      • Fall
      • Holiday
      • Winter
      • Spring
      • Summer
    • Recipe Filter
    • All Recipes
  • Ebooks
  • Shop
  • Lifestyle
  • About
    • Work With Me
    • Contact
  • Subscribe to receive latest recipes

    Join my newsletter for latest recipes!

  • Browse by Diet
    • Gluten-Free
    • Dairy-Free
    • Nut-Free
    • Paleo Friendly
    • Vegan
    • Vegetarian
  • Breakfast
  • Lunch & Dinner
  • Drinks
  • Snacks
  • Dessert
  • Appetizers
Home Recipes By Meal Dessert

The Best Healthy Pumpkin Muffins

121 Reviews Recipe
gf df nf
By: Erin Antoniak • Updated On May 23, 2026

This post may contain affiliate links. Please read my disclosure policy.

A cross between a dessert and a nutritious breakfast, these healthy pumpkin muffins are completely gluten-free! The fresh pumpkin puree and chocolate chips elevate these muffins to icon status.

bite into pumpkin muffin

Sweet healthy pumpkin muffins

These healthy pumpkin muffins are the perfect things to make for a fall snack, portable breakfast, or autumn brunch. They are sweet while not wreaking havoc on your blood sugar.

These muffins are never going to let you down. I mean, you will know they are going to be perfect right away because the pumpkin batter is fluffy and thick. You can tell that when you are pouring them into your muffin tin, these will be the softest pumpkin muffins you have ever had!

I think these pumpkin muffins rival the ones from Dunkin’ – while being better for you at the same time. These are perfectly soft, full of pumpkin spice, fluffy, and just so freaking good that you will want to eat them for breakfast every single day.

overhead best healthy pumpkin muffin in tray

Ingredients in these pumpkin oat muffins

The ingredients in these muffins are the best because they are simple and most likely ones that you already have on hand in your pantry. Baking can be really easy if you allow it to be!

I love to use recipes that don’t require fancy ingredients or anything that you wouldn’t already have at home. All you really need for these muffins:

  • Oat Flour– Oats are a heart-healthy whole grain. You’ll need 2 cups of oat flour.
  • Pumpkin Puree – Either use fresh pumpkin puree from your Jack-O-Lantern or add some from a can, but either way, use 1 cup.
  • Maple Syrup – Sweeten the muffins naturally with 1/3 a cup of real maple syrup.
  • Eggs – These are an emulsifier, so you’ll use 2 large eggs.
  • Coconut Oil – or Other Oil of Choice – Melt 1/2 a cup of your favorite type of healthy oil.
  • Baking Soda + Powder – Combine 1 teaspoon of baking powder with 1/2 a teaspoon of baking soda for the fluffiest muffins.
  • Vanilla – Pure vanilla extract adds deeper and richer flavors to the muffins, use one teaspoon.
  • Pumpkin Pie Spice – Use some premade pumpkin pie spice to really make them taste amazing – about two teaspoons.
  • Chocolate Chips – These chocolate chips are optional. If you want to use them, add about one cup.
the best healthy pumpkin muffins

Kitchen tools required

You don’t need any fancy kitchen gadgets to make this simple pumpkin muffin recipe. Grab the following tools before you begin.

  • Muffin Tin
  • Muffin Liners
  • Large Bowl
  • Whisk
  • Small Bowl
  • Wooden Spoon

For measuring, you will need 1 cup, 1/2 cup, 1/3 cup, 1 teaspoon, and 1/2 teaspoon.

half of pumpkin muffin

How to make the best pumpkin muffins

These best-ever healthy pumpkin muffins are so easy to make. You’ll want to start by making homemade oat flour which is way easier than it sounds. No fancy mills or grinding machines here, all you need is a blender!

Just throw some oats into a blender and pulse for 10 seconds or so until your oats are finely ground into flour.

Tip: Always measure the amount of oats you need after grinding your oats up because the measurement can change.

If you already have oat flour, you can skip this step and move directly to mixing the pumpkin muffin batter.

Put the oat flour aside and whisk together your eggs, oil, pumpkin, maple syrup, and vanilla until well combined.

Mix the oat flour, baking powder, baking soda, salt, and cinnamon in another bowl.

Add the dry ingredients into the wet ingredients and stir until completely combined. Then add in any mix-ins you want! I love adding chocolate chips or pecans to my pumpkin muffins. I even save some to put on top!

Pour batter into a lined and greased muffin tin, top with a little extra chocolate and crushed nuts if desired, and bake! Bake them until you insert a toothpick into the middle, and it comes out clean.

half of pumpkin muffin

Recipe Tips

Here are some questions people often ask about making pumpkin muffins. If you don’t see your question in this list, please leave it in the comments.

What other ingredients can I add to these oat flour pumpkin muffins?

You could add some cocoa powder to the muffins to make chocolate pumpkin muffins. Instead of chocolate chips, use white chocolate chips.

Should I make my own homemade oat powder?

This is entirely up to you. Some people like to make their own oat powder by pureeing rolled oats because it is less processed. It could be cheaper to make your own oat powder, especially if you buy rolled oats in bulk.

Can I turn this into a loaf of quick bread?

Yes, you can easily place the batter into a prepared loaf pan and make healthy pumpkin bread. You will have to adjust the baking time because it will take longer for the bread to bake.

Are these pumpkin muffins keto-friendly?

No, these muffins are not good to eat on a low-carb diet. The oat flour makes them much too high in carbs. Plus, the maple syrup increase that number even more. I suggest looking for a muffin recipe that uses either almond flour or coconut flour and is sweetened with a sugar substitute.

Storing leftovers

Storing muffins is simple. We like to let our muffins sit at room temperature in a sealed Tupperware container for up to four days. After that, we will do one of two things to ensure that they are stored properly – store them in the freezer or the refrigerator.

Freeze the muffins

Once cooled, wrap them up individually in plastic wrap and place them in a gallon Ziploc bag. This makes it easier to pull them out individually. Store them in the freezer for up to 6 months. When you are ready to eat them again, just let them thaw naturally in the refrigerator overnight.

Refrigerate them

This will increase the shelf life to longer than four days. Just stick the sealed, airtight container right into your fridge, and you will be good to go! These muffins will last about a week in the refrigerator.

If you liked this recipe, you’ll want to try these!

  • Paleo Banana Bread Muffins
  • Chocolate Zucchini Muffins
  • Paleo Pumpkin Bread

If you make this recipe, be sure to comment below and let me know how it was! Also tag @erinliveswhole on Instagram and use the hashtag #erinliveswhole so I can see it and feature you!

healthy pumpkin muffins

If you tried this recipe or any other recipes on my blog, please leave a 🌟 star rating and let me know how it went in the 📝 comments below. Follow @erinliveswhole on Instagram and tag me in any of the recipes you make so I can repost them!

over head pumpkni muffins
5 Stars 4 Stars 3 Stars 2 Stars 1 Star 4.9 from 121 reviews

The Best Healthy Pumpkin Muffins

Healthy pumpkin muffins are easy to make and made totally gluten free with certified gluten free oatmeal, fresh pumpkin puree, and a handful of chocolate chips! Toddlers, kids, teenagers, and adults all love these for a simple snack!

Prep: 10 Cook: 20 Total: 30 minutes
Yield 12 muffins 1x
Scale
Print Pin it Rate

Ingredients

  • 1 cup pumpkin puree
  • 1/2 cup coconut oil, melted
  • 2 eggs
  • 1/3 cup maple syrup
  • 1 tsp vanilla
  • 2 cups oat flour , loosely scooped, not packed. gluten-free if necessary. see notes for homemade.
  • 1 tsp baking powder
  • 1/2 tsp baking soda
  • 1/2 tsp salt
  • 2 tsp pumpkin pie spice
  • Optional: chocolate chips /chopped pecans – about 1 cup.

Instructions

  1. Preheat oven to 350F and line a muffin tin with liners and nonstick spray.
  2. In a large bowl, whisk pumpkin, coconut oil, eggs, maple syrup, and vanilla until well combined.
  3. In a small bowl, mix oat flour, baking powder, baking soda, salt and pumpkin pie spice.
  4. Add dry ingredients to wet and stir until combined. Stir in any mix-ins.
  5. Scoop into muffin tin and bake for about 22 minutes or until toothpick inserted comes out clean.
  6. Enjoy!

Notes

Make homemade oat flour by grinding oatmeal until very fine in a blender, measuring after blended.

Author: Erin Antoniak Category: breakfast, gluten-free Method: oven
over head pumpkni muffins

Did you make this?

Leave a comment below and tag @erinliveswhole on social media!

erinliveswhole

There may be affiliate links in this post! By purchasing a product I recommend, I may receive a small compensation. However, I only recommend products I absolutely love and use myself. Thank you for supporting Erin Lives Whole, it helps keep this blog afloat 🙂

You May Also Like...

  • Pumpkin bread cut in slices
    Healthy Pumpkin Bread
  • paleo pumpkin bread
    Paleo Pumpkin Bread
  • paleo pumpkin muffin with liner
    Paleo Pumpkin Muffins
  • Healthy Pumpkin Oat Bread
Previous Post
Next Post

Reader Interactions

Leave a Comment Cancel reply

Have a question? Use the form below to submit your question or comment. I love seeing what you made!

Recipe rating 5 Stars 4 Stars 3 Stars 2 Stars 1 Star
Recipe Rating




  1. Katherine says

    Posted on 8/7 at 1:38 pm

    Just made these today and they are SO good! I added grated zucchini for fun just to see how they would turn out and it worked really well!

    Reply
    • Erin says

      Posted on 8/9 at 7:34 pm

      Hi Katherine, thank you so much for your kind words!! I am so happy you enjoyed them and made it your own!

      Reply
  2. Seana Vitoff says

    Posted on 4/27 at 3:44 pm

    Do you think this recipe would work with just plain all-purpose flour?

    Reply
    • Erin says

      Posted on 8/5 at 12:25 am

      Hi Seana, yes, you can use a different flour. Before you bake just be sure to check the ratio because some flours are not a 1:1 ratio. Let me know what flour you use and how it comes out! 

      Reply
  3. Alexia Lynch says

    Posted on 4/3 at 2:08 pm

    SO good, so moist! I have made them 3 times throughout the past 3 weeks.

    Reply
    • Erin says

      Posted on 8/6 at 8:21 pm

      Hi Alexia, thanks for your kind words! I am so happy they’re part of your weekly baking routine!!

      Reply
  4. Jennaleigh says

    Posted on 3/31 at 5:54 pm

    These were amazingly delicious!!! I substituted almond flour for oat flour (1:1 ratio) and they came out perfectly! I also added about a cup of walnuts and a cup of chocolate chips to them too. I was planning on freezing them so they don’t go bad buuuuuuut I don’t think they’re going to make it to the freezer…haha!! YUM!!

    Reply
    • Erin says

      Posted on 8/6 at 8:57 pm

      Hi Jennaleigh, thank you for your kind words!! I am so happy you enjoyed them and made them your own!

      Reply
  5. Kelly says

    Posted on 3/25 at 12:44 pm

    OMG these are incredible! I made them exactly as written, but subbed dried cranberries for the chocolate chips. About to make a 2nd batch!

    Reply
    • Erin says

      Posted on 8/6 at 11:04 pm

      Hi Kelly, I am so happy you enjoyed them and made them your own! 🙂

      Reply
  6. Jean says

    Posted on 12/1 at 7:30 pm

    Absolutely Delicious!

    Reply
    • Erin says

      Posted on 12/8 at 3:33 pm

      Glad you liked them Jean! Thanks for sharing!

      Reply
    • Erin says

      Posted on 8/13 at 8:21 am

      Hi Jean! I am so happy you liked them!!

      Reply
  7. Gwen says

    Posted on 11/25 at 11:56 am

    Thanks for the recipe. These look great. Seems I can get away with making healthy muffins as long as I add the chocolate. Makes perfect sense to me;)

    Reply
    • Erin says

      Posted on 11/30 at 12:50 pm

      Exactly 😉

      Reply
  8. Josi says

    Posted on 11/8 at 3:47 pm

    What size can of pumpkin?

    Reply
    • Erin says

      Posted on 11/8 at 5:05 pm

      You only need one cup! I suggest scooping from a 15oz can.

      Reply
  9. Polly says

    Posted on 11/4 at 9:10 pm

    I made these and substituted avocado for coconut oil and unsweetened applesauce for eggs. Best healthy muffins I’ve made!! They were moist and delicious!

    Reply
    • Erin says

      Posted on 11/8 at 5:05 pm

      That makes me so happy Polly! Glad you like them.

      Reply
    • Andrea says

      Posted on 5/31 at 3:42 pm

      Can I give this 10 stars? My picky 6 year old loves these! Sub half the vanilla for maple extract and they are divine! We also add white chocolate chips and use avocado oil instead of coconut oil.
      Will make these again and again!!

      Reply
      • Erin says

        Posted on 6/1 at 5:04 pm

        Hi Andrea, so glad you both loved them so much and made them your own! 🙂

  10. Ginny says

    Posted on 11/4 at 2:37 pm

    Delicious, but definitely not a pour-able texture. The texture was more of a cookie batter, so I made chocolate chip pumpkin balls instead! I appreciate the limited amount of ingredients because less is better 🙂 I’m not an expert baker, but I assume in order to make this batter more like cake batter, you’d have to add more liquid ingredients.

    Reply
    • Erin says

      Posted on 11/8 at 5:05 pm

      Could be the brand of oats or how much you packed your cup full! So glad you still made it work!!

      Reply
  11. Katrina Miller says

    Posted on 10/29 at 9:02 am

    Do you know the calories and nutrition value

    Reply
    • Erin says

      Posted on 8/17 at 8:49 am

      Hi Katrina, yes, please see above for the nutritional value. Hope you enjoy the muffins!

      Reply
  12. Camille Lloyd says

    Posted on 10/27 at 4:58 pm

    I live in Colorado so I am high in altitude. Can you suggest something to add or change to the recipes for a more successful bake? I find when I follow a lot of your recipes they take a lot longer to cook. I’m wondering if I should increase my name temperature? Thanks!

    Reply
    • Erin says

      Posted on 10/28 at 4:43 pm

      Raise your oven temperature by 20-25 degrees. I would just keep an eye on it!

      Reply
  13. Mackenzie Gilbert says

    Posted on 10/23 at 8:40 pm

    I’m thinking of doing this recipe as a loaf… think it will work?

    Reply
    • Erin says

      Posted on 10/27 at 3:00 pm

      Yes! it definitely will.

      Reply
  14. Tara says

    Posted on 9/25 at 8:32 pm

    Made these tonight and subbed a mashed overripe banana for the eggs (vegan!) They came out delicioussss. Thanks for the recipe!!

    Reply
    • Erin says

      Posted on 9/30 at 11:47 am

      Love that the banana worked!! Enjoy!

      Reply
  15. Jamie says

    Posted on 9/24 at 6:11 pm

    Hi Erin,

    I love this recipe for its simplicity and great taste. i have made these muffins twice already! I am struggling with the texture – my batter is definitely not pourable and the muffins are more dense than fluffy. I can’t figure out what I am doing wrong. They still tase great tho ?

    Reply
    • Erin says

      Posted on 9/24 at 7:03 pm

      If could be due to the brand of oats you use. Also – loosely scoop the oats, you don’t want them to be packed! Not pourable is ok- I actually use a cookie scoop to get it into muffins. But they should be fluffy! I shared on my Instagram stories and ‘recipe highlight’ how I make them if you would like to see.

      I’ve also changed the amount of oat flour to 2 cups instead of 2 1/4. Try again and let me know!

      Reply
  16. Ioanna says

    Posted on 9/22 at 4:37 pm

    I made these yesterday and the taste was very good I literally had some of the batter before even baking them lol, but they weren’t fluffy they came out harder than I expected. Any suggestions as to what I can do next time?

    Reply
    • Erin says

      Posted on 9/23 at 10:21 am

      I’m sorry to hear that! I would check to make sure your baking powder + baking soda are fresh and not expired. I’m not sure why else they would be hard!!

      Reply
  17. Erin L says

    Posted on 9/22 at 12:57 pm

    Could you use honey instead of maple syrup? And if so would it be the same amount?

    Thanks!

    Reply
    • Erin says

      Posted on 9/22 at 1:41 pm

      Yes! Same amount will work.

      Reply
  18. Kelsey says

    Posted on 9/18 at 7:30 pm

    Made this in load form and subbed flax eggs and it was delicious!

    Reply
    • Erin says

      Posted on 8/22 at 1:56 pm

      Hi Kelsey, ah I am so happy you made it your own!

      Reply
  19. Kristen says

    Posted on 9/16 at 3:54 pm

    Could I substitute almond flour or another paleo flour for the oat flour?

    Reply
    • Erin says

      Posted on 9/16 at 6:54 pm

      This recipe is particular to oat flour, but I will be posting a pumpkin recipe with almond flour soon! 🙂

      Reply
      • Tori says

        Posted on 9/17 at 11:26 am

        Can I subsitute whole wheat flour?

      • Erin says

        Posted on 9/18 at 12:00 pm

        I haven’t personally tested it but you definitely can!

      • Erin says

        Posted on 9/24 at 10:57 am

        If could be due to the brand of oats you use. Also – loosely scoop the oats, you don’t want them to be packed! Not pourable is ok- I actually use a cookie scoop to get it into muffins. But they should be fluffy! I shared on my Instagram stories and ‘recipe highlight’ how I make them if you would like to see.

    • Jena says

      Posted on 4/23 at 4:36 pm

      I substituted almond flour and they are absolutely delicious! Great recipe!

      Reply
      • Erin says

        Posted on 4/24 at 8:17 am

        Hi Jena, so glad you loved them! 🙂

      • Angelica Weber says

        Posted on 11/27 at 1:56 pm

        I used baby oatmeal instead of oat for, and did an oil swap, I used sunflower oil.
        They are in the oven right now, so fingers crossed they taste as good as they smell. I will trash you on social media after I try them!

      • Erin says

        Posted on 11/28 at 1:50 pm

        Hi Angelica, love that you made them your own! How did they come out?

      • Angelica Weber says

        Posted on 1/23 at 10:00 pm

        They came out delicious
        (And I’m sorry for the previous typos)

      • Erin says

        Posted on 1/24 at 5:42 pm

        Hi Angelica, no worries and glad you loved them!!

  20. kaylee says

    Posted on 9/16 at 10:45 am

    Could you sub the coconut oil with avocado oil?

    Reply
    • Erin says

      Posted on 9/16 at 6:54 pm

      Yes! Great swap!

      Reply
    • Alexandra says

      Posted on 9/22 at 4:19 pm

      could i substitute coconut flour?

      Reply
      • Erin says

        Posted on 9/23 at 10:51 am

        You could try, but I haven’t tested.

    • Katie says

      Posted on 9/18 at 12:17 am

      Hello,
      Does the nutrition information include the choc chips that are optional?

      Reply
      • Erin says

        Posted on 9/18 at 6:04 pm

        Hi Katie, no it does not include them.

Newer Comments

Primary Sidebar

erin in front of a building

Hey there!

I’m Erin. Creator of Erin Lives Whole, a food blog with delicious and easy healthy recipes that will leave you feeling good. We’ve got everything from wholesome baked goods to comforting savory dishes. I can’t wait to see what you whip up! Read More...

grocery lists

Shop My Grocery Downloads

Do you head to the grocery store and feel overwhelmed with all of the options? Well, I've created FIVE downloadable and printable grocery lists from five different and popular grocery stores. All of my absolute must haves from Whole Foods, Target, a regular grocer, Trader Joe's, and Costco!

Shop Now

Popular Posts

chickpea brownie on a tray

Chickpea Brownies

bite out of healthy cookie dough ball

Healthy Cookie Dough Balls

cauliflower wings on plate

Buffalo Cauliflower Wings

pouring syrup on stack of oatmeal blender pancakes

Oatmeal Blender Pancakes

Trending Recipes

avocado corn salad

Summer Avocado Corn Salad

cilantro lime shrimp on plate

Cilantro Lime Shrimp with Coconut Cauliflower Rice

paleo cookie skillet with ice cream

Healthy Cookie Skillet

banana bread muffin on a rack

Paleo Banana Bread Muffins

Featured On

good housekeeping logo
parade logo
feed feed logo
business insider logo
everyday health logo
country living logo
bar desserts
truffles
bar desserts
bar desserts
muffins
vanilla birthday cake with chocolate icing

Get latest updates To your inbox!

Back to Top
© 2026 Erin Lives Whole
  • Privacy Policy
Site Credits Designed by Melissa Rose Design Developed by Once Coupled
healthy pumpkin muffins