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Home Recipes By Meal Dessert

The Best Healthy Pumpkin Muffins

121 Reviews Recipe
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By: Erin Antoniak • Updated On May 23, 2026

This post may contain affiliate links. Please read my disclosure policy.

A cross between a dessert and a nutritious breakfast, these healthy pumpkin muffins are completely gluten-free! The fresh pumpkin puree and chocolate chips elevate these muffins to icon status.

bite into pumpkin muffin

Sweet healthy pumpkin muffins

These healthy pumpkin muffins are the perfect things to make for a fall snack, portable breakfast, or autumn brunch. They are sweet while not wreaking havoc on your blood sugar.

These muffins are never going to let you down. I mean, you will know they are going to be perfect right away because the pumpkin batter is fluffy and thick. You can tell that when you are pouring them into your muffin tin, these will be the softest pumpkin muffins you have ever had!

I think these pumpkin muffins rival the ones from Dunkin’ – while being better for you at the same time. These are perfectly soft, full of pumpkin spice, fluffy, and just so freaking good that you will want to eat them for breakfast every single day.

overhead best healthy pumpkin muffin in tray

Ingredients in these pumpkin oat muffins

The ingredients in these muffins are the best because they are simple and most likely ones that you already have on hand in your pantry. Baking can be really easy if you allow it to be!

I love to use recipes that don’t require fancy ingredients or anything that you wouldn’t already have at home. All you really need for these muffins:

  • Oat Flour– Oats are a heart-healthy whole grain. You’ll need 2 cups of oat flour.
  • Pumpkin Puree – Either use fresh pumpkin puree from your Jack-O-Lantern or add some from a can, but either way, use 1 cup.
  • Maple Syrup – Sweeten the muffins naturally with 1/3 a cup of real maple syrup.
  • Eggs – These are an emulsifier, so you’ll use 2 large eggs.
  • Coconut Oil – or Other Oil of Choice – Melt 1/2 a cup of your favorite type of healthy oil.
  • Baking Soda + Powder – Combine 1 teaspoon of baking powder with 1/2 a teaspoon of baking soda for the fluffiest muffins.
  • Vanilla – Pure vanilla extract adds deeper and richer flavors to the muffins, use one teaspoon.
  • Pumpkin Pie Spice – Use some premade pumpkin pie spice to really make them taste amazing – about two teaspoons.
  • Chocolate Chips – These chocolate chips are optional. If you want to use them, add about one cup.
the best healthy pumpkin muffins

Kitchen tools required

You don’t need any fancy kitchen gadgets to make this simple pumpkin muffin recipe. Grab the following tools before you begin.

  • Muffin Tin
  • Muffin Liners
  • Large Bowl
  • Whisk
  • Small Bowl
  • Wooden Spoon

For measuring, you will need 1 cup, 1/2 cup, 1/3 cup, 1 teaspoon, and 1/2 teaspoon.

half of pumpkin muffin

How to make the best pumpkin muffins

These best-ever healthy pumpkin muffins are so easy to make. You’ll want to start by making homemade oat flour which is way easier than it sounds. No fancy mills or grinding machines here, all you need is a blender!

Just throw some oats into a blender and pulse for 10 seconds or so until your oats are finely ground into flour.

Tip: Always measure the amount of oats you need after grinding your oats up because the measurement can change.

If you already have oat flour, you can skip this step and move directly to mixing the pumpkin muffin batter.

Put the oat flour aside and whisk together your eggs, oil, pumpkin, maple syrup, and vanilla until well combined.

Mix the oat flour, baking powder, baking soda, salt, and cinnamon in another bowl.

Add the dry ingredients into the wet ingredients and stir until completely combined. Then add in any mix-ins you want! I love adding chocolate chips or pecans to my pumpkin muffins. I even save some to put on top!

Pour batter into a lined and greased muffin tin, top with a little extra chocolate and crushed nuts if desired, and bake! Bake them until you insert a toothpick into the middle, and it comes out clean.

half of pumpkin muffin

Recipe Tips

Here are some questions people often ask about making pumpkin muffins. If you don’t see your question in this list, please leave it in the comments.

What other ingredients can I add to these oat flour pumpkin muffins?

You could add some cocoa powder to the muffins to make chocolate pumpkin muffins. Instead of chocolate chips, use white chocolate chips.

Should I make my own homemade oat powder?

This is entirely up to you. Some people like to make their own oat powder by pureeing rolled oats because it is less processed. It could be cheaper to make your own oat powder, especially if you buy rolled oats in bulk.

Can I turn this into a loaf of quick bread?

Yes, you can easily place the batter into a prepared loaf pan and make healthy pumpkin bread. You will have to adjust the baking time because it will take longer for the bread to bake.

Are these pumpkin muffins keto-friendly?

No, these muffins are not good to eat on a low-carb diet. The oat flour makes them much too high in carbs. Plus, the maple syrup increase that number even more. I suggest looking for a muffin recipe that uses either almond flour or coconut flour and is sweetened with a sugar substitute.

Storing leftovers

Storing muffins is simple. We like to let our muffins sit at room temperature in a sealed Tupperware container for up to four days. After that, we will do one of two things to ensure that they are stored properly – store them in the freezer or the refrigerator.

Freeze the muffins

Once cooled, wrap them up individually in plastic wrap and place them in a gallon Ziploc bag. This makes it easier to pull them out individually. Store them in the freezer for up to 6 months. When you are ready to eat them again, just let them thaw naturally in the refrigerator overnight.

Refrigerate them

This will increase the shelf life to longer than four days. Just stick the sealed, airtight container right into your fridge, and you will be good to go! These muffins will last about a week in the refrigerator.

If you liked this recipe, you’ll want to try these!

  • Paleo Banana Bread Muffins
  • Chocolate Zucchini Muffins
  • Paleo Pumpkin Bread

If you make this recipe, be sure to comment below and let me know how it was! Also tag @erinliveswhole on Instagram and use the hashtag #erinliveswhole so I can see it and feature you!

healthy pumpkin muffins

If you tried this recipe or any other recipes on my blog, please leave a 🌟 star rating and let me know how it went in the 📝 comments below. Follow @erinliveswhole on Instagram and tag me in any of the recipes you make so I can repost them!

over head pumpkni muffins
5 Stars 4 Stars 3 Stars 2 Stars 1 Star 4.9 from 121 reviews

The Best Healthy Pumpkin Muffins

Healthy pumpkin muffins are easy to make and made totally gluten free with certified gluten free oatmeal, fresh pumpkin puree, and a handful of chocolate chips! Toddlers, kids, teenagers, and adults all love these for a simple snack!

Prep: 10 Cook: 20 Total: 30 minutes
Yield 12 muffins 1x
Scale
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Ingredients

  • 1 cup pumpkin puree
  • 1/2 cup coconut oil, melted
  • 2 eggs
  • 1/3 cup maple syrup
  • 1 tsp vanilla
  • 2 cups oat flour , loosely scooped, not packed. gluten-free if necessary. see notes for homemade.
  • 1 tsp baking powder
  • 1/2 tsp baking soda
  • 1/2 tsp salt
  • 2 tsp pumpkin pie spice
  • Optional: chocolate chips /chopped pecans – about 1 cup.

Instructions

  1. Preheat oven to 350F and line a muffin tin with liners and nonstick spray.
  2. In a large bowl, whisk pumpkin, coconut oil, eggs, maple syrup, and vanilla until well combined.
  3. In a small bowl, mix oat flour, baking powder, baking soda, salt and pumpkin pie spice.
  4. Add dry ingredients to wet and stir until combined. Stir in any mix-ins.
  5. Scoop into muffin tin and bake for about 22 minutes or until toothpick inserted comes out clean.
  6. Enjoy!

Notes

Make homemade oat flour by grinding oatmeal until very fine in a blender, measuring after blended.

Author: Erin Antoniak Category: breakfast, gluten-free Method: oven
over head pumpkni muffins

Did you make this?

Leave a comment below and tag @erinliveswhole on social media!

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There may be affiliate links in this post! By purchasing a product I recommend, I may receive a small compensation. However, I only recommend products I absolutely love and use myself. Thank you for supporting Erin Lives Whole, it helps keep this blog afloat 🙂

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Recipe Rating




  1. Claire says

    Posted on 11/4 at 5:06 pm

    Love a healthy muffin recipe that actually tastes good. I substituted the coconut oil for mixed fruit purée (baby food sachet with apple, banana, peach and courgette) and threw in a handful of chopped pecans. Yum! Also made my own pumpkin spice mix (your recipe) as it’s really hard to find in the UK and it’s soooo good!

    Reply
    • Erin says

      Posted on 11/6 at 1:04 pm

      Hi Claire, thank you so much for sharing! I am so happy you made it your own and enjoyed it and my pumpkin pie spice! 🙂

      Reply
  2. Abby says

    Posted on 10/29 at 4:40 pm

    the texture was nice but it was bland and not sweet:(

    Reply
  3. Katy says

    Posted on 10/19 at 10:38 pm

    Just the right amount of sweet and so fluffy!

    Reply
    • Erin says

      Posted on 10/20 at 11:34 am

      Hi Katy, I am so happy you enjoyed them!!

      Reply
  4. Margy Bowker says

    Posted on 10/19 at 12:40 pm

    I made these and they turned out so yummy! I only put 5 chocolate chips in each one because they are for my grandchildren. But I wish I had added more the chips really add deliciousness!!

    Reply
    • Erin says

      Posted on 10/19 at 2:07 pm

      Hi Margy, thanks for sharing! More chocolate chips are always welcomed! 🙂

      Reply
  5. Neida says

    Posted on 10/15 at 1:33 pm

    Omg these are really the best pumpkin muffins!!! The texture was perfect and they were fluffy and soooooo delicious!!! Will be making these on a weekly basis! I used homeade pumpkin puree too 🤗 thanks for this recipe!!!

    Reply
    • Erin says

      Posted on 10/16 at 12:24 pm

      Hi Neida, thanks for your kind words! I am so happy you enjoyed them!

      Reply
  6. Raquel Sosnick says

    Posted on 10/7 at 3:05 pm

    These came out super fluffy on the inside! But they didn’t rise…any ideas why? I don’t think my baking powder or soda is expired.
    Also thank you for inspiring me to make my own oat flour. So easy in vitamix!

    Reply
    • Erin says

      Posted on 10/12 at 2:12 pm

      Hi Raquel, that’s odd! I haven’t heard anyone else have that problem and not sure if your leavening agents were expired? Let me know if you try them again and they come out better!

      Reply
      • Alex says

        Posted on 10/27 at 7:56 pm

        Mine actually didn’t rise at all either and I know none of my ingredients expired as I just used them! Still delicious, just tiny.

      • Erin says

        Posted on 10/28 at 1:20 pm

        Hi Alex, hmm that is so strange. I don’t know what happened. Let me know if you try them again and they come out differently.

  7. Rachel says

    Posted on 10/6 at 8:45 pm

    This is the second time I’ve made them & I absolutely love them! The oat flour has such a doughy texture and they’re SO moist! I added a tiny bit less of the maple syrup the second time to cut down on the sugar a little bit and they were still just as delicious. Love these !!!

    Reply
    • Erin says

      Posted on 10/7 at 2:07 pm

      Hi Rachel, I am so thrilled you enjoyed them so much! Thanks for sharing!

      Reply
  8. Brittney Muus says

    Posted on 10/2 at 1:27 pm

    This is a great recipe! I actually modified and mixed everything in the blender and then poured it into the muffin tins! I mixed a handful of chocolate chips into the individual cups after pouring.
    I used 2 cups of whole rolled oats instead of oat flour, substituted half of the oil for applesauce and reduced the maple syrup to 1/4c. Turned out moist and delicious!

    Reply
    • Erin says

      Posted on 10/3 at 4:21 am

      Hi Brittney, thank you so much for your kind words! I am so happy you enjoyed them and made them your own!

      Reply
  9. Victoria says

    Posted on 10/1 at 1:21 pm

    Made these last night because I wanted pumpkin muffins but was out of regular flour. I just ground some oats as recommended and swapped honey for maple syrup – they came out moist, fluffy, and delicious! Thanks for the recipe.

    Reply
    • Erin says

      Posted on 10/1 at 2:16 pm

      Hi Victoria, I am so happy you enjoyed them and made them with oats. Thank you for sharing!

      Reply
  10. M says

    Posted on 9/29 at 2:11 am

    These turned out so lovely! I will admit that I misread the 1 cup of pumpkin purée for 1 can, so the whole can went in. I followed every other ingredient and measurement exactly, and happy to report that my batter was perfect, resulting in moist, delicious cupcakes. My first time making oat flour too, what a great tip!! Thank you

    Reply
    • Erin says

      Posted on 10/1 at 8:02 am

      Hi! Thanks for sharing and glad to hear they still came out well!! 🙂

      Reply
  11. Kristen says

    Posted on 9/24 at 9:04 am

    Delicious! Followed the recipe exactly and they came out great. I’ve made these three times now. Third time I accidentally left out the pumpkin spice and they were still tasty – but I won’t forget next time!

    Reply
    • Erin says

      Posted on 9/25 at 7:46 am

      Hi Kristen! I am so happy to hear they still came out well! 🙂

      Reply
  12. Catherine says

    Posted on 9/23 at 8:48 pm

    Followed the recipe exactly and these came out perfect. I’ve been looking for a go to pumpkin recipe and found it! Thanks, Erin!

    Reply
    • Erin says

      Posted on 9/25 at 7:45 am

      Hi Catherine, I am so happy you enjoyed them! Thanks for sharing!

      Reply
  13. Katie says

    Posted on 9/21 at 2:29 pm

    Just made these for the first time & loved them! I subbed honey for the maple syrup (Bc that’s what I have on hand #Coronavirus) & they came out great. I think the best thing is that these can be made with things you have in your pantry- no special grocery trip required. I also didn’t feel like I wanted to take a sugar-coma-induces nap after eating one for breakfast which is usually the case with other muffins.

    Reply
    • Erin says

      Posted on 9/22 at 8:46 am

      Hi Katie, I am so glad you loved the muffins and made them with what you had. Thanks for sharing!

      Reply
  14. karren Farnsworth says

    Posted on 9/20 at 3:36 pm

    These muffins are very moist and delicious. Be sure to use organic oats to avoid glyphosate (Round-Up)as much as possible.

    Reply
    • Erin says

      Posted on 9/21 at 4:55 am

      Hi Karren, I am thrilled you love them! 🙂

      Reply
  15. Hannah says

    Posted on 9/20 at 2:03 pm

    Does the nutritional information included the optional addition of chocolate chips, or do you need to add the chocolate to the calorie count?

    Reply
    • Erin says

      Posted on 9/25 at 10:33 am

      Hi Hannah, yes! It includes the chocolate chips.

      Reply
  16. Sami says

    Posted on 9/17 at 10:47 am

    These were wonderful! I made a batch with chocolate chips and one without, both were great! Thanks for this recipe!

    Reply
    • Erin says

      Posted on 9/18 at 4:21 am

      Hi Sami, I am so happy you enjoyed them! 🙂

      Reply
  17. Ariana says

    Posted on 9/10 at 7:15 pm

    All I have to say is OMG. Thats how pumped I am about this recipe! Tastes AMAZING and nicely moist in the inside.. Yum! I have to say, every recipe I have tried so far from your blog have not let me down! Thanks for sharing! 🙂

    Reply
    • Erin says

      Posted on 9/11 at 11:34 pm

      Hi Ariana, thank you so much for your kind words! I am so happy you enjoyed them. Thanks for your support!

      Reply
      • Hollie says

        Posted on 9/13 at 9:48 am

        When you say one can of pumpkin, what size? 15 oz? Or a large size can of 29oz?

      • Erin says

        Posted on 9/16 at 4:02 pm

        Hi Hollie, the recipe calls for 1 cup of pumpkin puree. Let me know how they come out for you! 🙂

  18. Taylor K. says

    Posted on 9/8 at 12:59 am

    Seriously SO good! The flavor is even better once they cool for a while. Shared this with so many of my friends because they’re PSL fiends. Thanks for the recipe, will definitely be making this over and over again; especially since it’s healthy! 🙂

    Reply
    • Erin says

      Posted on 9/8 at 8:17 am

      Hi Taylor, I am thrilled you liked them and shared them with your friends!

      Reply
  19. Jaimie says

    Posted on 9/1 at 2:09 pm

    The nutrition is for 18 muffins but the recipe says it serves 12. So if you make 12 muffins the calories/macros etcs are higher than what’s listed?

    Reply
    • Erin says

      Posted on 9/5 at 12:39 am

      Hi Jaimie, sorry about that. Just updated it on the recipe. Thanks for catching!

      Reply
  20. simonandrew says

    Posted on 8/28 at 8:38 am

    Mouthwatering Dish……..

    Reply
    • Erin says

      Posted on 8/28 at 9:24 am

      Hi! Thank you so much. Let me know how yours come out!

      Reply
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I’m Erin. Creator of Erin Lives Whole, a food blog with delicious and easy healthy recipes that will leave you feeling good. We’ve got everything from wholesome baked goods to comforting savory dishes. I can’t wait to see what you whip up! Read More...

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