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A cross between a dessert and a nutritious breakfast, these healthy pumpkin muffins are completely gluten-free! The fresh pumpkin puree and chocolate chips elevate these muffins to icon status.

Sweet healthy pumpkin muffins
These healthy pumpkin muffins are the perfect things to make for a fall snack, portable breakfast, or autumn brunch. They are sweet while not wreaking havoc on your blood sugar.
These muffins are never going to let you down. I mean, you will know they are going to be perfect right away because the pumpkin batter is fluffy and thick. You can tell that when you are pouring them into your muffin tin, these will be the softest pumpkin muffins you have ever had!
I think these pumpkin muffins rival the ones from Dunkin’ – while being better for you at the same time. These are perfectly soft, full of pumpkin spice, fluffy, and just so freaking good that you will want to eat them for breakfast every single day.

Ingredients in these pumpkin oat muffins
The ingredients in these muffins are the best because they are simple and most likely ones that you already have on hand in your pantry. Baking can be really easy if you allow it to be!
I love to use recipes that don’t require fancy ingredients or anything that you wouldn’t already have at home. All you really need for these muffins:
- Oat Flour– Oats are a heart-healthy whole grain. You’ll need 2 cups of oat flour.
- Pumpkin Puree – Either use fresh pumpkin puree from your Jack-O-Lantern or add some from a can, but either way, use 1 cup.
- Maple Syrup – Sweeten the muffins naturally with 1/3 a cup of real maple syrup.
- Eggs – These are an emulsifier, so you’ll use 2 large eggs.
- Coconut Oil – or Other Oil of Choice – Melt 1/2 a cup of your favorite type of healthy oil.
- Baking Soda + Powder – Combine 1 teaspoon of baking powder with 1/2 a teaspoon of baking soda for the fluffiest muffins.
- Vanilla – Pure vanilla extract adds deeper and richer flavors to the muffins, use one teaspoon.
- Pumpkin Pie Spice – Use some premade pumpkin pie spice to really make them taste amazing – about two teaspoons.
- Chocolate Chips – These chocolate chips are optional. If you want to use them, add about one cup.

Kitchen tools required
You don’t need any fancy kitchen gadgets to make this simple pumpkin muffin recipe. Grab the following tools before you begin.
- Muffin Tin
- Muffin Liners
- Large Bowl
- Whisk
- Small Bowl
- Wooden Spoon
For measuring, you will need 1 cup, 1/2 cup, 1/3 cup, 1 teaspoon, and 1/2 teaspoon.

How to make the best pumpkin muffins
These best-ever healthy pumpkin muffins are so easy to make. You’ll want to start by making homemade oat flour which is way easier than it sounds. No fancy mills or grinding machines here, all you need is a blender!
Just throw some oats into a blender and pulse for 10 seconds or so until your oats are finely ground into flour.
Tip: Always measure the amount of oats you need after grinding your oats up because the measurement can change.
If you already have oat flour, you can skip this step and move directly to mixing the pumpkin muffin batter.
Put the oat flour aside and whisk together your eggs, oil, pumpkin, maple syrup, and vanilla until well combined.
Mix the oat flour, baking powder, baking soda, salt, and cinnamon in another bowl.
Add the dry ingredients into the wet ingredients and stir until completely combined. Then add in any mix-ins you want! I love adding chocolate chips or pecans to my pumpkin muffins. I even save some to put on top!
Pour batter into a lined and greased muffin tin, top with a little extra chocolate and crushed nuts if desired, and bake! Bake them until you insert a toothpick into the middle, and it comes out clean.

Recipe Tips
Here are some questions people often ask about making pumpkin muffins. If you don’t see your question in this list, please leave it in the comments.
What other ingredients can I add to these oat flour pumpkin muffins?
You could add some cocoa powder to the muffins to make chocolate pumpkin muffins. Instead of chocolate chips, use white chocolate chips.
Should I make my own homemade oat powder?
This is entirely up to you. Some people like to make their own oat powder by pureeing rolled oats because it is less processed. It could be cheaper to make your own oat powder, especially if you buy rolled oats in bulk.
Can I turn this into a loaf of quick bread?
Yes, you can easily place the batter into a prepared loaf pan and make healthy pumpkin bread. You will have to adjust the baking time because it will take longer for the bread to bake.
Are these pumpkin muffins keto-friendly?
No, these muffins are not good to eat on a low-carb diet. The oat flour makes them much too high in carbs. Plus, the maple syrup increase that number even more. I suggest looking for a muffin recipe that uses either almond flour or coconut flour and is sweetened with a sugar substitute.
Storing leftovers
Storing muffins is simple. We like to let our muffins sit at room temperature in a sealed Tupperware container for up to four days. After that, we will do one of two things to ensure that they are stored properly – store them in the freezer or the refrigerator.
Freeze the muffins
Once cooled, wrap them up individually in plastic wrap and place them in a gallon Ziploc bag. This makes it easier to pull them out individually. Store them in the freezer for up to 6 months. When you are ready to eat them again, just let them thaw naturally in the refrigerator overnight.
Refrigerate them
This will increase the shelf life to longer than four days. Just stick the sealed, airtight container right into your fridge, and you will be good to go! These muffins will last about a week in the refrigerator.
If you liked this recipe, you’ll want to try these!
If you make this recipe, be sure to comment below and let me know how it was! Also tag @erinliveswhole on Instagram and use the hashtag #erinliveswhole so I can see it and feature you!

If you tried this recipe or any other recipes on my blog, please leave a 🌟 star rating and let me know how it went in the 📝 comments below. Follow @erinliveswhole on Instagram and tag me in any of the recipes you make so I can repost them!
The Best Healthy Pumpkin Muffins
Healthy pumpkin muffins are easy to make and made totally gluten free with certified gluten free oatmeal, fresh pumpkin puree, and a handful of chocolate chips! Toddlers, kids, teenagers, and adults all love these for a simple snack!
Ingredients
- 1 cup pumpkin puree
- 1/2 cup coconut oil, melted
- 2 eggs
- 1/3 cup maple syrup
- 1 tsp vanilla
- 2 cups oat flour , loosely scooped, not packed. gluten-free if necessary. see notes for homemade.
- 1 tsp baking powder
- 1/2 tsp baking soda
- 1/2 tsp salt
- 2 tsp pumpkin pie spice
- Optional: chocolate chips /chopped pecans – about 1 cup.
Instructions
- Preheat oven to 350F and line a muffin tin with liners and nonstick spray.
- In a large bowl, whisk pumpkin, coconut oil, eggs, maple syrup, and vanilla until well combined.
- In a small bowl, mix oat flour, baking powder, baking soda, salt and pumpkin pie spice.
- Add dry ingredients to wet and stir until combined. Stir in any mix-ins.
- Scoop into muffin tin and bake for about 22 minutes or until toothpick inserted comes out clean.
- Enjoy!
Notes
Make homemade oat flour by grinding oatmeal until very fine in a blender, measuring after blended.
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Claire says
Love a healthy muffin recipe that actually tastes good. I substituted the coconut oil for mixed fruit purée (baby food sachet with apple, banana, peach and courgette) and threw in a handful of chopped pecans. Yum! Also made my own pumpkin spice mix (your recipe) as it’s really hard to find in the UK and it’s soooo good!
Erin says
Hi Claire, thank you so much for sharing! I am so happy you made it your own and enjoyed it and my pumpkin pie spice! 🙂
Abby says
the texture was nice but it was bland and not sweet:(
Katy says
Just the right amount of sweet and so fluffy!
Erin says
Hi Katy, I am so happy you enjoyed them!!
Margy Bowker says
I made these and they turned out so yummy! I only put 5 chocolate chips in each one because they are for my grandchildren. But I wish I had added more the chips really add deliciousness!!
Erin says
Hi Margy, thanks for sharing! More chocolate chips are always welcomed! 🙂
Neida says
Omg these are really the best pumpkin muffins!!! The texture was perfect and they were fluffy and soooooo delicious!!! Will be making these on a weekly basis! I used homeade pumpkin puree too 🤗 thanks for this recipe!!!
Erin says
Hi Neida, thanks for your kind words! I am so happy you enjoyed them!
Raquel Sosnick says
These came out super fluffy on the inside! But they didn’t rise…any ideas why? I don’t think my baking powder or soda is expired.
Also thank you for inspiring me to make my own oat flour. So easy in vitamix!
Erin says
Hi Raquel, that’s odd! I haven’t heard anyone else have that problem and not sure if your leavening agents were expired? Let me know if you try them again and they come out better!
Alex says
Mine actually didn’t rise at all either and I know none of my ingredients expired as I just used them! Still delicious, just tiny.
Erin says
Hi Alex, hmm that is so strange. I don’t know what happened. Let me know if you try them again and they come out differently.
Rachel says
This is the second time I’ve made them & I absolutely love them! The oat flour has such a doughy texture and they’re SO moist! I added a tiny bit less of the maple syrup the second time to cut down on the sugar a little bit and they were still just as delicious. Love these !!!
Erin says
Hi Rachel, I am so thrilled you enjoyed them so much! Thanks for sharing!
Brittney Muus says
This is a great recipe! I actually modified and mixed everything in the blender and then poured it into the muffin tins! I mixed a handful of chocolate chips into the individual cups after pouring.
I used 2 cups of whole rolled oats instead of oat flour, substituted half of the oil for applesauce and reduced the maple syrup to 1/4c. Turned out moist and delicious!
Erin says
Hi Brittney, thank you so much for your kind words! I am so happy you enjoyed them and made them your own!
Victoria says
Made these last night because I wanted pumpkin muffins but was out of regular flour. I just ground some oats as recommended and swapped honey for maple syrup – they came out moist, fluffy, and delicious! Thanks for the recipe.
Erin says
Hi Victoria, I am so happy you enjoyed them and made them with oats. Thank you for sharing!
M says
These turned out so lovely! I will admit that I misread the 1 cup of pumpkin purée for 1 can, so the whole can went in. I followed every other ingredient and measurement exactly, and happy to report that my batter was perfect, resulting in moist, delicious cupcakes. My first time making oat flour too, what a great tip!! Thank you
Erin says
Hi! Thanks for sharing and glad to hear they still came out well!! 🙂
Kristen says
Delicious! Followed the recipe exactly and they came out great. I’ve made these three times now. Third time I accidentally left out the pumpkin spice and they were still tasty – but I won’t forget next time!
Erin says
Hi Kristen! I am so happy to hear they still came out well! 🙂
Catherine says
Followed the recipe exactly and these came out perfect. I’ve been looking for a go to pumpkin recipe and found it! Thanks, Erin!
Erin says
Hi Catherine, I am so happy you enjoyed them! Thanks for sharing!
Katie says
Just made these for the first time & loved them! I subbed honey for the maple syrup (Bc that’s what I have on hand #Coronavirus) & they came out great. I think the best thing is that these can be made with things you have in your pantry- no special grocery trip required. I also didn’t feel like I wanted to take a sugar-coma-induces nap after eating one for breakfast which is usually the case with other muffins.
Erin says
Hi Katie, I am so glad you loved the muffins and made them with what you had. Thanks for sharing!
karren Farnsworth says
These muffins are very moist and delicious. Be sure to use organic oats to avoid glyphosate (Round-Up)as much as possible.
Erin says
Hi Karren, I am thrilled you love them! 🙂
Hannah says
Does the nutritional information included the optional addition of chocolate chips, or do you need to add the chocolate to the calorie count?
Erin says
Hi Hannah, yes! It includes the chocolate chips.
Sami says
These were wonderful! I made a batch with chocolate chips and one without, both were great! Thanks for this recipe!
Erin says
Hi Sami, I am so happy you enjoyed them! 🙂
Ariana says
All I have to say is OMG. Thats how pumped I am about this recipe! Tastes AMAZING and nicely moist in the inside.. Yum! I have to say, every recipe I have tried so far from your blog have not let me down! Thanks for sharing! 🙂
Erin says
Hi Ariana, thank you so much for your kind words! I am so happy you enjoyed them. Thanks for your support!
Hollie says
When you say one can of pumpkin, what size? 15 oz? Or a large size can of 29oz?
Erin says
Hi Hollie, the recipe calls for 1 cup of pumpkin puree. Let me know how they come out for you! 🙂
Taylor K. says
Seriously SO good! The flavor is even better once they cool for a while. Shared this with so many of my friends because they’re PSL fiends. Thanks for the recipe, will definitely be making this over and over again; especially since it’s healthy! 🙂
Erin says
Hi Taylor, I am thrilled you liked them and shared them with your friends!
Jaimie says
The nutrition is for 18 muffins but the recipe says it serves 12. So if you make 12 muffins the calories/macros etcs are higher than what’s listed?
Erin says
Hi Jaimie, sorry about that. Just updated it on the recipe. Thanks for catching!
simonandrew says
Mouthwatering Dish……..
Erin says
Hi! Thank you so much. Let me know how yours come out!