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Home Recipes By Meal Dessert

The Best Healthy Pumpkin Muffins

121 Reviews Recipe
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By: Erin Antoniak • Updated On May 23, 2026

This post may contain affiliate links. Please read my disclosure policy.

A cross between a dessert and a nutritious breakfast, these healthy pumpkin muffins are completely gluten-free! The fresh pumpkin puree and chocolate chips elevate these muffins to icon status.

bite into pumpkin muffin

Sweet healthy pumpkin muffins

These healthy pumpkin muffins are the perfect things to make for a fall snack, portable breakfast, or autumn brunch. They are sweet while not wreaking havoc on your blood sugar.

These muffins are never going to let you down. I mean, you will know they are going to be perfect right away because the pumpkin batter is fluffy and thick. You can tell that when you are pouring them into your muffin tin, these will be the softest pumpkin muffins you have ever had!

I think these pumpkin muffins rival the ones from Dunkin’ – while being better for you at the same time. These are perfectly soft, full of pumpkin spice, fluffy, and just so freaking good that you will want to eat them for breakfast every single day.

overhead best healthy pumpkin muffin in tray

Ingredients in these pumpkin oat muffins

The ingredients in these muffins are the best because they are simple and most likely ones that you already have on hand in your pantry. Baking can be really easy if you allow it to be!

I love to use recipes that don’t require fancy ingredients or anything that you wouldn’t already have at home. All you really need for these muffins:

  • Oat Flour– Oats are a heart-healthy whole grain. You’ll need 2 cups of oat flour.
  • Pumpkin Puree – Either use fresh pumpkin puree from your Jack-O-Lantern or add some from a can, but either way, use 1 cup.
  • Maple Syrup – Sweeten the muffins naturally with 1/3 a cup of real maple syrup.
  • Eggs – These are an emulsifier, so you’ll use 2 large eggs.
  • Coconut Oil – or Other Oil of Choice – Melt 1/2 a cup of your favorite type of healthy oil.
  • Baking Soda + Powder – Combine 1 teaspoon of baking powder with 1/2 a teaspoon of baking soda for the fluffiest muffins.
  • Vanilla – Pure vanilla extract adds deeper and richer flavors to the muffins, use one teaspoon.
  • Pumpkin Pie Spice – Use some premade pumpkin pie spice to really make them taste amazing – about two teaspoons.
  • Chocolate Chips – These chocolate chips are optional. If you want to use them, add about one cup.
the best healthy pumpkin muffins

Kitchen tools required

You don’t need any fancy kitchen gadgets to make this simple pumpkin muffin recipe. Grab the following tools before you begin.

  • Muffin Tin
  • Muffin Liners
  • Large Bowl
  • Whisk
  • Small Bowl
  • Wooden Spoon

For measuring, you will need 1 cup, 1/2 cup, 1/3 cup, 1 teaspoon, and 1/2 teaspoon.

half of pumpkin muffin

How to make the best pumpkin muffins

These best-ever healthy pumpkin muffins are so easy to make. You’ll want to start by making homemade oat flour which is way easier than it sounds. No fancy mills or grinding machines here, all you need is a blender!

Just throw some oats into a blender and pulse for 10 seconds or so until your oats are finely ground into flour.

Tip: Always measure the amount of oats you need after grinding your oats up because the measurement can change.

If you already have oat flour, you can skip this step and move directly to mixing the pumpkin muffin batter.

Put the oat flour aside and whisk together your eggs, oil, pumpkin, maple syrup, and vanilla until well combined.

Mix the oat flour, baking powder, baking soda, salt, and cinnamon in another bowl.

Add the dry ingredients into the wet ingredients and stir until completely combined. Then add in any mix-ins you want! I love adding chocolate chips or pecans to my pumpkin muffins. I even save some to put on top!

Pour batter into a lined and greased muffin tin, top with a little extra chocolate and crushed nuts if desired, and bake! Bake them until you insert a toothpick into the middle, and it comes out clean.

half of pumpkin muffin

Recipe Tips

Here are some questions people often ask about making pumpkin muffins. If you don’t see your question in this list, please leave it in the comments.

What other ingredients can I add to these oat flour pumpkin muffins?

You could add some cocoa powder to the muffins to make chocolate pumpkin muffins. Instead of chocolate chips, use white chocolate chips.

Should I make my own homemade oat powder?

This is entirely up to you. Some people like to make their own oat powder by pureeing rolled oats because it is less processed. It could be cheaper to make your own oat powder, especially if you buy rolled oats in bulk.

Can I turn this into a loaf of quick bread?

Yes, you can easily place the batter into a prepared loaf pan and make healthy pumpkin bread. You will have to adjust the baking time because it will take longer for the bread to bake.

Are these pumpkin muffins keto-friendly?

No, these muffins are not good to eat on a low-carb diet. The oat flour makes them much too high in carbs. Plus, the maple syrup increase that number even more. I suggest looking for a muffin recipe that uses either almond flour or coconut flour and is sweetened with a sugar substitute.

Storing leftovers

Storing muffins is simple. We like to let our muffins sit at room temperature in a sealed Tupperware container for up to four days. After that, we will do one of two things to ensure that they are stored properly – store them in the freezer or the refrigerator.

Freeze the muffins

Once cooled, wrap them up individually in plastic wrap and place them in a gallon Ziploc bag. This makes it easier to pull them out individually. Store them in the freezer for up to 6 months. When you are ready to eat them again, just let them thaw naturally in the refrigerator overnight.

Refrigerate them

This will increase the shelf life to longer than four days. Just stick the sealed, airtight container right into your fridge, and you will be good to go! These muffins will last about a week in the refrigerator.

If you liked this recipe, you’ll want to try these!

  • Paleo Banana Bread Muffins
  • Chocolate Zucchini Muffins
  • Paleo Pumpkin Bread

If you make this recipe, be sure to comment below and let me know how it was! Also tag @erinliveswhole on Instagram and use the hashtag #erinliveswhole so I can see it and feature you!

healthy pumpkin muffins

If you tried this recipe or any other recipes on my blog, please leave a 🌟 star rating and let me know how it went in the 📝 comments below. Follow @erinliveswhole on Instagram and tag me in any of the recipes you make so I can repost them!

over head pumpkni muffins
5 Stars 4 Stars 3 Stars 2 Stars 1 Star 4.9 from 121 reviews

The Best Healthy Pumpkin Muffins

Healthy pumpkin muffins are easy to make and made totally gluten free with certified gluten free oatmeal, fresh pumpkin puree, and a handful of chocolate chips! Toddlers, kids, teenagers, and adults all love these for a simple snack!

Prep: 10 Cook: 20 Total: 30 minutes
Yield 12 muffins 1x
Scale
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Ingredients

  • 1 cup pumpkin puree
  • 1/2 cup coconut oil, melted
  • 2 eggs
  • 1/3 cup maple syrup
  • 1 tsp vanilla
  • 2 cups oat flour , loosely scooped, not packed. gluten-free if necessary. see notes for homemade.
  • 1 tsp baking powder
  • 1/2 tsp baking soda
  • 1/2 tsp salt
  • 2 tsp pumpkin pie spice
  • Optional: chocolate chips /chopped pecans – about 1 cup.

Instructions

  1. Preheat oven to 350F and line a muffin tin with liners and nonstick spray.
  2. In a large bowl, whisk pumpkin, coconut oil, eggs, maple syrup, and vanilla until well combined.
  3. In a small bowl, mix oat flour, baking powder, baking soda, salt and pumpkin pie spice.
  4. Add dry ingredients to wet and stir until combined. Stir in any mix-ins.
  5. Scoop into muffin tin and bake for about 22 minutes or until toothpick inserted comes out clean.
  6. Enjoy!

Notes

Make homemade oat flour by grinding oatmeal until very fine in a blender, measuring after blended.

Author: Erin Antoniak Category: breakfast, gluten-free Method: oven
over head pumpkni muffins

Did you make this?

Leave a comment below and tag @erinliveswhole on social media!

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There may be affiliate links in this post! By purchasing a product I recommend, I may receive a small compensation. However, I only recommend products I absolutely love and use myself. Thank you for supporting Erin Lives Whole, it helps keep this blog afloat 🙂

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Recipe Rating




  1. Jennaleigh says

    Posted on 1/18 at 3:47 pm

    My son and I absolutely love these! Can I peanut butter to the recipe? If so, how much do you think, 1\2 or 1\3 cup?

    Reply
    • Erin says

      Posted on 1/18 at 4:14 pm

      Hi! So happy you both loved them! You definitely can. I haven’t tried them with pb, but I would try 1/3 of a cup and see how they come out and you can always experiment with more or less next time! Let me know how they come out!

      Reply
  2. Tammy Youngs says

    Posted on 1/18 at 2:28 pm

    Love this recipe. Perfect cake like healthy muffin. I used a few 60% cocoa chips on the top for some sweetness. And used Sesame oil (instead of coconut oil), because that’s what I had on hand.
    Thank you for a great recipe!

    Reply
    • Erin says

      Posted on 1/18 at 4:11 pm

      Hi Tammy, so glad you enjoyed them and made them your own!!

      Reply
    • Himiko says

      Posted on 9/19 at 9:22 am

      This recipe is amazing! I love it!

      Reply
      • Erin says

        Posted on 9/19 at 6:24 pm

        Hi Himiko, so glad you loved them!!

  3. Ashley says

    Posted on 1/14 at 12:08 am

    The “best” pumpkin muffins is not an overstatement. We LOVE these. I make them on repeat year-round because we love them so much. A clean, easy, grab and go breakfast or desert!

    Reply
    • Erin says

      Posted on 1/14 at 11:31 pm

      Hi Ashley, so so happy you loved them!

      Reply
  4. Corinne says

    Posted on 1/11 at 7:21 pm

    Could I use stevia instead of maple syrup? If so, same amount?

    Reply
    • Erin says

      Posted on 1/15 at 12:14 am

      Hi Corinne, you can omit the maple and do a few drops of stevia, may need more liquid though. Let me know how they come out!

      Reply
  5. Tina Hausmann says

    Posted on 1/10 at 12:08 pm

    Should you use quick cook oats or old fashion oats.

    Reply
    • Erin says

      Posted on 1/15 at 12:10 am

      Hi Tina, you can use either! Let me know how they come out!

      Reply
  6. Morgan says

    Posted on 1/9 at 8:37 pm

    Yummy and easy to make!

    Reply
    • Erin says

      Posted on 1/12 at 10:02 pm

      Hi Morgan, so glad you liked them!!

      Reply
  7. Neel says

    Posted on 1/4 at 9:31 am

    Love these muffins! The oat flour makes the texture 10/10!

    Reply
    • Erin says

      Posted on 1/4 at 3:42 pm

      Hi Neel, glad you love them!!

      Reply
  8. Leena says

    Posted on 1/3 at 10:56 pm

    I made these exactly as written – they’re delicious! And also incredibly easy. My husband is a tough customer and he thought they were tasty, and my 3-year old twins gobbled them up! The texture is a bit crumbly the next day but they’re still great.

    Reply
    • Erin says

      Posted on 1/4 at 3:31 pm

      Hi Leena, so glad you and your family loved them!!

      Reply
  9. Jill K says

    Posted on 1/3 at 7:07 pm

    These were so good! So fluffy, not dry at all. I shared with multiple friends and everyone loved them! Only tiny detail I noticed was a very slight and mild coconut flavor which I am sensitive to, but still didn’t mind because they were delicious and the ingredients are so good!

    Reply
    • Erin says

      Posted on 1/4 at 3:13 pm

      Hi Jill, I am so glad they were a hit! 🙂

      Reply
  10. Court says

    Posted on 1/3 at 4:06 pm

    I LOVED THESE!! I made them for my family and my fiancé’s family, and absolutely nothing went to waste! The chocolate chips I used were milk chocolate, and I blended oats to make my own oat flour. When I made them again, I had saved some of the oat flour from the last batch so they were even easier to make. Can’t wait to make them (and eat them!) again!

    Reply
    • Erin says

      Posted on 1/4 at 1:53 pm

      Hi Court, thanks for sharing! I am thrilled everyone loved them! 🙂

      Reply
  11. Ariadne Swichtenberg says

    Posted on 12/10 at 3:27 pm

    I made these pumpkin muffins, and they were a hit with the whole family. I added both mini chocolate chips and chopped walnuts. I was a little concerned about the amount of coconut oil, so may try the avocado substitute mentioned below. So good everyone asked me to make another batch.

    Reply
    • Erin says

      Posted on 12/11 at 2:17 pm

      Hi Ariadne, I am so happy your family enjoyed them and that sounds good too! 🙂

      Reply
  12. Debbie Dudik says

    Posted on 12/9 at 2:48 pm

    This is by far my favorite muffin recipe! I make them all the time and freeze them.
    Thank you so much Erin!

    Reply
    • Erin says

      Posted on 12/10 at 2:31 pm

      Hi Debbie, thanks for sharing! Glad you love them!

      Reply
  13. Diane Dutmer Pfeffer says

    Posted on 12/4 at 7:15 pm

    I used sugar free maple syrup in the recipe and drizzled a powder sugar frosting over the top.
    It was delicious!

    Reply
    • Erin says

      Posted on 12/7 at 4:21 pm

      Hi Diane, I am so glad you liked them!!

      Reply
  14. Jenna says

    Posted on 11/29 at 8:31 am

    These muffins were such a TREAT! I always love anything pumpkin and these did not disappoint. Also I did not realize how easy oat flour was to make, thank you!!

    Reply
    • Erin says

      Posted on 11/30 at 4:17 pm

      Hi Jenna, I am so glad that you made oat flour and liked the muffins!

      Reply
  15. Sarah Carlson says

    Posted on 11/28 at 2:30 pm

    So good! I started a new diet recently to combat inflammation and these are my go to snack. I sub half the oat flour for pea protein isolate to add more protein and it works great- can’t really tell the difference. I also use xylitol instead of the maple syrup because I can’t have syrup and add a little bit of Greek yogurt to replace the moisture. I love doing them as mini muffins for a bite sized snack

    Reply
    • Erin says

      Posted on 11/30 at 4:00 pm

      Hi Sarah, I am so glad you found the muffins and made them your own!

      Reply
  16. Katie says

    Posted on 11/23 at 2:00 pm

    Wow!! These were amazing! They were very similar to the Dunkin’ Donuts version, which I love but is so unhealthy! Not a lot of sweetener in these but they still taste sweet. Just need to figure out how to make the topping like the DD muffins have! Thanks for such a great recipe.

    Reply
    • Erin says

      Posted on 11/23 at 7:15 pm

      Hi Katie, I am so happy you loved them so much! Thanks for sharing!

      Reply
  17. Louise says

    Posted on 11/22 at 11:13 am

    These are so good I can hardly believe how healthy and easy they are! The quality of the pumpkin used is everything, though. I baked a whole fresh pumpkin and made the puree from that, and even with only half the oil they came out moist and decadent. Last week I made them with dryer pumpkin puree I’d had in the fridge for a while, and they turned out dry but still tasty enough to try again. This recipe will be a new favourite for sure!

    Reply
    • Erin says

      Posted on 11/23 at 7:10 pm

      Hi Louise, thanks for sharing! I am so happy you enjoyed them!! 🙂

      Reply
  18. yvonne says

    Posted on 11/19 at 5:22 pm

    instead of oat flour can you use wheat or almond flour?

    Reply
    • Erin says

      Posted on 11/20 at 9:08 pm

      Hi Yvonne, yes they should be fine. Just double check the ratio depending which one you use. Let me know how your muffins come out!

      Reply
  19. Lori says

    Posted on 11/10 at 4:07 pm

    They tasted great but were very very crumbly. Next time I think I should ground the oats longer

    Reply
    • Erin says

      Posted on 11/11 at 2:19 pm

      Hi Lori, I am glad you liked it and hope that helps next time you make them!

      Reply
  20. Laura says

    Posted on 11/8 at 7:52 pm

    They had a good flavor but these were dense for me too. I used Organic oat flour (just opened), avocado oil and applesauce as someone else mentioned. My baking powder expires in a year and the soda I just opened a week ago. Not sure what went wrong.

    Reply
    • Erin says

      Posted on 11/10 at 3:05 pm

      Hi Laura, thanks for the feedback. Unfortunately if you stray from the recipe I created, it may not work as well. Hope you can try them again.

      Reply
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I’m Erin. Creator of Erin Lives Whole, a food blog with delicious and easy healthy recipes that will leave you feeling good. We’ve got everything from wholesome baked goods to comforting savory dishes. I can’t wait to see what you whip up! Read More...

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