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Broccoli Cheddar Spaghetti Squash Casserole

40 Reviews Recipe
gf nf
By: Erin Antoniak • Updated On May 19, 2025

Cook up a dreamy, cheesy meal with this Broccoli Cheddar Spaghetti Squash Casserole. It’s like your favorite soup transformed into a casserole and combined with other flavor-bomb ingredients!

Broccoli Cheddar Spaghetti Squash Casserole in bowl

A deliciously cheesy broccoli cheddar chicken casserole

Broccoli cheddar lovers, listen up! Today we’re giving the classic flavor combo a spin and baking it casserole-style with this delicious broccoli cheddar spaghetti squash casserole creation.

The dish features the obvious: cheddar cheese and broccoli, but it also includes flavorful ingredients like minced garlic, onion, spaghetti squash, and even Greek yogurt. It’s a multi-layered dish that you’re going to devour!

If you’ve never cooked with spaghetti squash, don’t worry. This detailed tutorial will walk you through it! It’s a great ingredient to add to meals for filling them with low-calorie density and great taste.

Broccoli Cheddar Spaghetti Squash Casserole

Ingredients in baked spaghetti squash casserole

  • Spaghetti squash: Start with 1 whole spaghetti squash. It should be around 2-2.5 lb and amount to 4 cups after being cooked and shredded.
  • Chicken: Next, you will need 4 cups of cooked chicken. You can bake and dice it or use pulled chicken from a rotisserie.
  • Avocado oil: Use 2 tbsp of avocado oil to cook the onion and broccoli.
  • Onion: As for the onion, you’ll need 1/2 of a large yellow onion, diced.
  • Broccoli: Next, roughly chop up 5 cups of broccoli.
  • Garlic: Add flavor with 4 cloves of minced garlic.
  • Yogurt: 1 cup of plain Greek yogurt will be used to add consistency and flavor to the casserole.
  • Cheese: Add delicious cheesiness with 1.5 cups of cheddar, divided.
  • Seasonings: Add additional flavor by including 2 tsp of salt, 1/2 tsp of pepper, 2 tsp of garlic powder, and 2 tsp of onion powder.
  • Eggs: Finally, you will need 2 whisked eggs.

Tools needed to create this recipe

To make broccoli cheddar spaghetti squash casserole, you will need a baking dish and nonstick spray. You’ll also need a large pan, spatula, large mixing bowl, stirring utensil, and whisk.

For measuring, grab the following sized cups: 1/2 tsp, 1 tsp, 1 tbsp, 1/2 cup, and 1 cup.

Photo of ingredients for Broccoli Cheddar Spaghetti Squash Casserole with labels.
broccoli cheddar spaghetti casserole in dish

How to make broccoli cheddar spaghetti squash casserole

You’re just over an hour away from an ooey, gooey, cheesy, and warm casserole that tastes delicious and is so satisfying! You will need about 10 minutes for prepping and around an hour for cooking and baking.

First, preheat the oven to 400°F and grease a 9×13 baking dish.

Prepare the spaghetti squash according to how to cook spaghetti squash, or use your preferred squash cooking method.

Then, prepare the chicken. I used a rotisserie and it worked great!

Heat the avocado oil in a large pan over medium-high heat and add the onion. After one minute, add the broccoli.

Cook the onions and broccoli for 6-7 minutes or until they begin to tenderize, and then add the garlic for the last minute of cooking. Turn off the heat.

In a large bowl, add the spaghetti squash, chicken, broccoli and onions, Greek yogurt, 1 cup of cheese, salt, pepper, garlic powder, and onion powder. Stir until well combined.

Add the whisked eggs. Stir until everything is mixed well.

Pour the mix into the greased baking dishes and top with the remaining cheese.

Bake for 45-50 minutes, or until the inside is set and bubbling.

Let cool for 15 minutes before eating.

Broccoli Cheddar Spaghetti Squash Casserole

Substitution Tip

Throughout this recipe there are a couple of substitutions you can try out.

Avocado Oil
You can use any cooking oil — olive, coconut, canola, vegetable, etc. If using coconut, choose a refined version so you don’t wind up with a coconut flavor.

Yellow Onion
Though I recommend yellow onion in this dish, white or red will also work!

Cauliflower
Feel free to switch the broccoli for cauliflower if that’s more your style.

Cheddar Cheese
Cheddar can be replaced with your favorite cheeses like pepper jack, mozzarella, or even Swiss!

If you liked this recipe, you’ll want to try these!

I love combining squash into my casseroles and even using it in soup! Here are some yummy squash recipes using both spaghetti and butternut variations.

  • Lemon Chicken Spaghetti Squash Casserole
  • Butternut Squash Soup (Vegan, Dairy-free)
  • Barbecue Chicken Spaghetti Squash Boats

Recipe by Erin Antoniak and Photos by Bake and Bacon

Broccoli Cheddar Spaghetti Squash Casserole in bowl
Broccoli Cheddar Spaghetti Squash Casserole in bowl
5 Stars 4 Stars 3 Stars 2 Stars 1 Star 5 from 40 reviews

Broccoli Cheddar Spaghetti Squash Casserole

Cook up a dreamy, cheesy meal with this Broccoli Cheddar Spaghetti Squash Casserole. It’s like your favorite soup transformed into a casserole and combined with other flavor-bomb ingredients!

Prep: 60 Cook: 60 Total: 2 hours
Yield 10 servings 1x
Scale
Print Pin it Rate

Ingredients

  • 1 spaghetti squash (2 – 2.5 lb, cooked and shredded) – about 4 cups
  • 4 cups cooked chicken, diced or pulled rotisserie
  • 2 tbsp avocado oil
  • 1/2 large yellow onion, diced
  • 5 cups roughly chopped broccoli
  • 4 cloves garlic, minced
  • 1 cup plain Greek yogurt
  • 1.5 cups cheddar cheese (divided)
  • 2 tsp salt
  • 1/2 tsp pepper
  • 2 tsp garlic powder
  • 2 tsp onion powder
  • 2 eggs, whisked.

Instructions

  1. Preheat oven to 400F and grease 9×13 baking dish.
  2. Prepare your spaghetti squash according to this recipe, or however else you make cooked spaghetti squash. Prepare your chicken as well. I used rotisserie chicken for this and it worked great.
  3. In a large pan, heat avocado oil and onion over medium-high heat. After a minute, add in broccoli.
  4. Cook onions and broccoli for 6-7 minutes or until begin to tenderize, and then add garlic for last minute of cooking. Turn off heat.
  5. In a large bowl, add spaghetti squash, chicken, broccoli and onions, greek yogurt, 1 cup of cheese, salt, pepper, garlic powder, and onion powder. Stir until well combined.
  6. Add in whisked eggs and stir until everything is mixed together well.
  7. Pour into greased 9×13 baking dish. Top with remaining cheese.
  8. Bake for 45-50 minutes or until inside is set and bubbling.
  9. Let cool 15 minutes before eating.
Author: Erin Antoniak Category: meal prep, lunch, casserole, dinner Method: oven Cuisine: American Diet: Gluten Free
Broccoli Cheddar Spaghetti Squash Casserole in bowl

Did you make this?

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Recipe Rating




  1. Alexandra P. says

    Posted on 12/17 at 12:22 am

    This is such a fun way to serve spaghetti squash! I was looking for new way to serve it and this is now my go to.

    Reply
    • Erin says

      Posted on 12/18 at 6:52 pm

      Hi Alexandra, so happy you loved it!!

      Reply
  2. Jess says

    Posted on 11/11 at 8:40 pm

    Got this from your collab with Home appetite and it was SO GOOD. I can’t wait to make it myself!

    Reply
    • Erin says

      Posted on 11/12 at 5:16 pm

      Hi Jess, so happy you love it so much! 🙂

      Reply
  3. Mylie Long says

    Posted on 9/15 at 9:34 pm

    This is probably the 50th ELW recipe I’ve made and they just keep getting better! I’m obsessed with all your recipes thank you for everything you create! This was filling, delicious, light, and satisfying. Obsessed!!

    Reply
    • Erin says

      Posted on 9/17 at 9:58 am

      Hi Mylie, so happy you loved it and thanks for all of your support!! 🙂

      Reply
  4. Rachel says

    Posted on 8/12 at 7:56 pm

    Accidentally forgot to add the eggs in but it was still very good! Will be making again!

    Reply
    • Erin says

      Posted on 8/14 at 2:02 pm

      Hi Rachel, so glad you loved it! Hope you can make it again with them!

      Reply
  5. Jessie says

    Posted on 6/30 at 9:24 am

    Healthy good comfort meal!

    Reply
    • Erin says

      Posted on 6/30 at 4:41 pm

      Hi Jessie, so glad you loved it! 🙂

      Reply
  6. Danielle says

    Posted on 6/9 at 6:25 pm

    So good!

    Reply
    • Erin says

      Posted on 6/13 at 5:33 pm

      Hi Danielle, so glad you liked it! 🙂

      Reply
  7. Kayla says

    Posted on 1/23 at 10:03 am

    I think I’ve made this recipe 20 times at this point. My husband and I absolutely love it!! So healthy and delicious.

    Reply
    • Erin says

      Posted on 1/24 at 7:15 pm

      Hi Kayla, so happy it was a hit!!

      Reply
  8. Amanda says

    Posted on 7/8 at 1:38 pm

    I absolutely love this recipe. I have made it too many times to count at this point.

    Reply
    • Erin says

      Posted on 7/10 at 5:35 pm

      Hi Amanda, so happy you love it SO much! 🙂

      Reply
  9. Lauren says

    Posted on 4/28 at 7:05 pm

    I fell off the spaghetti squash wagon for a few years and this has put me firmly back on it! The best spaghetti squash dish I’ve ever made. And truly better than broccoli/rice/cheese casseroles full of cream of chicken soup and cheese wiz!

    Reply
    • Erin says

      Posted on 4/29 at 5:11 pm

      Hi Lauren, so glad you enjoyed it! Thanks for sharing!! 🙂

      Reply
  10. Nicole says

    Posted on 1/27 at 11:48 am

    Loved this! So much flavor and even better the second day! Will be making again

    Reply
    • Erin says

      Posted on 1/27 at 4:05 pm

      Hi Nicole, so happy you loved it! 🙂

      Reply
  11. Jamie says

    Posted on 1/17 at 10:30 pm

    This is the PERFECT easy, healthy meal prep dinner to have in your rotation. Also you can barely taste the veggies — just tastes so cheesy and creamy! A staple going forward

    Reply
    • Erin says

      Posted on 1/19 at 10:09 am

      Hi Jamie, so happy you loved it so much! 🙂

      Reply
  12. Sami says

    Posted on 1/9 at 4:36 pm

    Erin does it again. This is the perfect recipe that made 3-4 nights of dinner for my husband and me. We’re already making it again. So delicious!! Thanks Erin!

    Reply
    • Erin says

      Posted on 1/12 at 10:44 pm

      Hi Sami, so glad you both loved it so much!! 🙂

      Reply
  13. Nicole C says

    Posted on 1/4 at 6:34 pm

    10/10! I’m not the biggest spaghetti squash fan, but this made me a fan! This is delicious. My husband and I both had seconds!

    Reply
    • Erin says

      Posted on 1/6 at 9:52 pm

      Hi Nicole, so happy you both liked it! 🙂

      Reply
  14. Gabby S says

    Posted on 12/21 at 1:44 pm

    So yummy. Plenty for leftovers. Will be making this in repeat.

    Reply
    • Erin says

      Posted on 12/21 at 2:47 pm

      Hi Gabby, so happy you loved it!!

      Reply
  15. Catherine says

    Posted on 12/19 at 4:39 pm

    Amazing low carb meal option! So tasty! And my boyfriend loved it too which was a plus cause getting him to eat a meal with spaghetti squash can be a challenge!

    Reply
    • Erin says

      Posted on 12/19 at 4:43 pm

      Hi Catherine, so glad you both loved it! 🙂

      Reply
  16. Jenna says

    Posted on 12/19 at 1:05 pm

    This was my first ELW recipe to try and it was amazing! I made/ate it last night, and I can’t wait to eat the leftovers again tonight. So flavorful and filling — you just feel good eating it knowing it’s full of so much good stuff. Thanks, Erin! Can’t wait to trying more recipes in the future!

    Reply
    • Erin says

      Posted on 12/19 at 4:31 pm

      Hi Jenna, welcome!! SO happy you loved it!!

      Reply
  17. Makenna Hornsby says

    Posted on 12/14 at 12:45 am

    This casserole turned out soo good. It was super flavorful and comforting. My dad who doesn’t always prefer healthy options loved it! Will definitely make again!

    Reply
    • Erin says

      Posted on 12/14 at 11:22 am

      Hi Makenna, I am so happy you both loved it!!

      Reply
  18. Kathryn says

    Posted on 12/3 at 8:17 pm

    Great cold weather dinner! Tasted like a creamy casserole and it was nice to have the added veggies.

    Reply
    • Erin says

      Posted on 12/5 at 10:01 am

      Hi Kathryn, so glad you loved it!!

      Reply
  19. Sophia says

    Posted on 11/30 at 5:40 pm

    WOW! I was a little skeptical thinking that this would be watery, but it was amazing!! the texture is perfect and it’s a great way to get some extra veggies in 🙂 thank you for this!

    Reply
    • Erin says

      Posted on 12/1 at 1:45 pm

      Hi Sophia, so glad you loved it so much!! 🙂

      Reply
  20. Kat says

    Posted on 11/29 at 7:08 pm

    So tasty and was even better as leftovers the next day! Made it last week and have already made it again this week!

    Reply
    • Erin says

      Posted on 11/30 at 12:50 pm

      Hi Kat, so glad you liked it and yes! So good once it soaks in!

      Reply
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I’m Erin. Creator of Erin Lives Whole, a food blog with delicious and easy healthy recipes that will leave you feeling good. We’ve got everything from wholesome baked goods to comforting savory dishes. I can’t wait to see what you whip up! Read More...

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Broccoli Cheddar Spaghetti Squash Casserole
Broccoli Cheddar Spaghetti Squash Casserole
Broccoli Cheddar Spaghetti Squash Casserole
Broccoli Cheddar Spaghetti Squash Casserole