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Home By Meal Dessert

Paleo Chocolate Cupcakes (gluten free)

★★★★★ 1 Reviews Recipe Print
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By: Erin11/20/19

This post may contain affiliate links. Please read my disclosure policy.

paleo chocolate cupcake with vegan peanut butter icing and peanut butter cups on top

These Paleo Chocolate Cupcakes are moist and filled with rich, chocolate flavor! They’re healthy, gluten free, and dairy free, yet they will please an entire crowd. Topped with vegan peanut butter frosting for a delicious touch!

paleo chocolate cupcake with peanuts

The tastiest paleo chocolate cupcakes

Chocolate cupcakes have always been my weakness. I mean, anything chocolate has always been my weakness, but when someone’s mom would make homemade chocolate cupcakes (even the ones from the box), I would be so incredibly happy. 

Tom and I had a conversation last week about being a fruit dessert person versus a chocolate dessert person, and he is most definitely the former. Once in a while he enjoys his chocolate desserts, but nine times out of ten, the kid would pick the dessert with fruit. For me, chocolate wins every time.

These homemade paleo chocolate cupcakes are absolutely incredible. You can feel happy and at ease enjoying them knowing they’re made with REAL ingredients that don’t leave you with an incredible sugar hangover. 

If you need more chocolate after these cupcakes, try my Double Chocolate Mint Paleo Cookies or Easy Paleo Brownies.

paleo chocolate cupcake in liner

The perfect chocolate dessert

Ever since I posted my chocolate cake with tofu frosting a few months ago, I knew I wanted to make them into a handheld cupcake version. In my opinion, everything is better in miniature form!

So, I got to work playing with the ratios and timing and figuring out what type of frosting I could put on top to really take these to the next level. 

I’d say I did a pretty great job!

bite out of paleo chocolate cupcake

The cupcakes are made with an almond flour and pumpkin base (although you can’t taste the pumpkin – it just provides a nice, fluffy texture!), and then mixed with some other very simple ingredients like cocoa powder and maple syrup.

Here’s a full list of the required ingredients:

Cupcakes:

  • Almond flour
  • Cocoa powder
  • Salt
  • Baking soda
  • Canned pumpkin
  • Eggs
  • Maple Syrup
  • Coconut oil
  • Almond butter
  • Vanilla
  • Chocolate chips (optional)

Peanut Butter Frosting:

  • Firm tofu
  • Natural, salted peanut butter
  • Maple Syrup
  • Vanilla
  • Crushed peanut butter cups (optional)
paleo chocolate cupcake on parchment paper

Kitchen tools used to make this recipe

For this quick and easy cupcake recipe, you’ll only need 6 supplies! Gather the following items before you begin:

  • Cupcake tin
  • Cupcake liners
  • Small mixing bowl
  • Large mixing bowl
  • Mixing spoon or spatula
  • Food processor

A healthy cupcake recipe

These delicious chocolate cupcakes are refined sugar free, dairy free, and grain free, and they’re great for people on the paleo diet! 

I topped them off with my vegan peanut butter frosting, which is a take on my vegan chocolate frosting. It’s literally one of the best things I’ve created. It’s made with tofu, but honestly, you would never know! Tofu absorbs the flavors around it, which in this case is peanut butter.

Also…I know the frosting is vegan, but you definitely need to use eggs in these cakes. For this recipe I don’t think a flax egg would work, only because paleo baking is so finicky. 

For some vegan dessert options, try my Vegan Banana Bread, No-Bake Chocolate Peanut Butter Bars, or my Easy Vegan Black Bean Brownies!

I hope you guys love these paleo chocolate cupcakes!

tray of paleo chocolate cupcakes

How to prepare paleo chocolate cupcakes

These cupcakes are very simple to make. Here’s how it’s done!

Step 1: To start, preheat the oven to 350F and line your cupcake tin with liners.

Step 2: In a small bowl, mix the almond flour, cocoa, salt, and baking soda. In a larger bowl, whisk the pumpkin with the eggs until very well combined and smooth. 

Step 3: Next, add the maple syrup, oil, almond butter, and vanilla. Beat until smooth. Add the dry ingredients to the wet, stirring until fully combined. If desired, fold in chocolate chips.

Step 4: Scoop into cupcake tins, filling about ¾ of the way. Bake for 15-17 minutes, or until a toothpick comes out clean. 

Step 5: For the frosting, start by blending all of the ingredients in a food processor until they’re completely smooth. You’ll need to stop and scrape down the sides at least once. 

Step 6: Then, let the frosting cool in the refrigerator for at least 30 minutes. Once the cupcakes are cooled, pipe the frosting on top. If desired, top with crushed peanut butter cups! 

How to store paleo cupcakes

I recommend storing these cupcakes in the refrigerator to keep them fresh and to prevent melting. Stored in an airtight container, these cupcakes should stay fresh and delicious for 2-3 days.

pinterest image for paleo chocolate cupcakes

Try these desserts from Erin Lives Whole!

Here are some more delicious and healthy dessert ideas! Don’t worry, I remembered the fruit lovers! Below you’ll find a mix of chocolate and fruity desserts.

  • Healthy Chocolate Chip Cookie Skillet
  • Super Fudgy Brownies
  • Healthy Strawberry Banana Muffins
  • Healthy Apple Crisp

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★★★★★ 5 from 1 reviews

Paleo Chocolate Cupcakes (gluten free)

These Paleo Chocolate Cupcakes are moist and filled with rich, chocolate flavor! They’re healthy, gluten free, and dairy free, yet they will please an entire crowd. Topped with vegan peanut butter frosting for a delicious touch!

Prep: 10Cook: 20Total: 30 minutes
Yield 14 cupcakes 1x
Print Pin it Rate

Ingredients

  • 1 cup almond flour
  • 2/3 cup cocoa powder
  • 1/2 tsp salt
  • 1 tsp baking soda
  • 1 cup canned pumpkin
  • 4 eggs, whisked
  • 1/2 cup maple syrup
  • 1/2 cup coconut oil
  • 1 cup almond butter
  • 1 tsp vanilla
  • 3/4 cup chocolate chips  (optional)

Peanut Butter Frosting

  • 1 package firm tofu
  • 3/4 cup natural salted peanut butter
  • 1/3 cup maple syrup
  • 1 tsp vanilla
  • Crushed peanut butter cups if desired.

Instructions

  1. Preheat oven to 350F and line cupcake tin with cupcake liners
  2. In a small bowl, mix almond flour, cocoa, salt, and baking soda.
  3. In a larger bowl, whisk pumpkin with eggs until very well combined and smooth.
  4. Add in maple syrup, oil, almond butter and vanilla. Beat until smooth.
  5. Add dry ingredients to wet, stirring until fully combined.
  6. If desired, fold in chocolate chips.
  7. Scoop into cupcake tin and fill 3/4 the way.
  8. Bake for 15-17 minutes or until toothpick inserted comes out clean.
  9. Let cupcakes cool completely before frosting.

For the frosting:

  1. In a food processor, blend all ingredients until completely smooth. You will need to stop and scrape down sides at least once.
  2. Let cool in refrigerator for at least 30 minutes.
  3. Pipe onto completely cooled cupcakes.
  4. Top with more crushed peanut butter cups

Store in fridge.

Author: Erin Lives WholeCategory: dessert, gluten-free, dairy-free, vegan

Did you make this?

Leave a comment below and tag @erinliveswhole on social media!

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There may be affiliate links in this post! By purchasing a product I recommend, I may receive a small compensation. However, I only recommend products I absolutely love and use myself. Thank you for supporting Erin Lives Whole, it helps keep this blog afloat 🙂

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Recipe rating ★☆ ★☆ ★☆ ★☆ ★☆

  1. Natasha Le says

    Posted on 3/21 at 12:17 am

    Hi!
    Question: If I don’t make the frosting, do I need to fridge them? Thanks!!

    Reply
    • Erin says

      Posted on 3/25 at 4:04 pm

      Hi Natasha, nope, no need to refrigerate.

      Reply
  2. Hannah says

    Posted on 8/30 at 8:13 pm

    Hi! Looking to make this for a birthday coming up. Have you made this into a cake? Do you have an idea what the bake times would be? Same temperature?

    Reply
    • Erin says

      Posted on 9/5 at 12:38 am

      Hi Hannah, I have a paleo chocolate cake recipe using this exact recipe on my website. Here is the link: https://www.erinliveswhole.com/paleo-chocolate-cake/ Let me know how it comes out!

      Reply
  3. Renee says

    Posted on 2/12 at 5:16 pm

    These cupcakes were absolute HEAVEN!!! They tasted amazing, were incredibly moist, and I never would have guessed that they were gluten-free. I also made the vegan peanut butter frosting to go along with them which was also delicious! Just a few things to add… my batch yielded 17 cupcakes and required closer to 25 minutes to cook. I know everyones ovens are different so just be sure to keep doing the toothpick test! Thanks for the wonderful recipe Erin!!

    ★★★★★

    Reply
  4. monika says

    Posted on 1/28 at 8:28 pm

    Tofu comes in different size packages.
    How many GRAMS of tofu?
    Thanks!

    Reply
    • Erin says

      Posted on 1/28 at 8:37 pm

      397 g

      Reply
      • monika says

        Posted on 1/29 at 9:15 am

        Hey, thanks for replying.
        I do have another question though – when did tofu become paleo? Did you just mean that this recipe is grain-free?

      • Erin says

        Posted on 1/29 at 4:18 pm

        Monika, this recipe is for paleo gluten free cupcakes. If you are referring to the recipe for the vegan frosting, then that is on a separate page, but I added the frosting here because I like to combine the paleo gluten free cupcakes with the vegan frosting.

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I’m Erin. Creator of Erin Lives Whole, a food blog with delicious and easy healthy recipes that will leave you feeling good. We’ve got everything from wholesome baked goods to comforting savory dishes. I can’t wait to see what you whip up! Read More...

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